Gm20506 Gene Detail

Summary

• Symbol
  Gm20506
• Name
  predicted gene 20506

• Feature Type
  lncRNA gene
• IDs
  MGI:5141971
  NCBI Gene: 102633400
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:34466309-34478315 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141971	lncRNA gene	Chr17:34466309-34478315 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  4

• NCBI Gene
  102633400

Representative Sequences			Length	Strain/Species
genomic	102633400	NCBI Gene Model | MGI Sequence Detail	12007	C57BL/6J
transcript	XR_003953449	RefSeq | MGI Sequence Detail	3326	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20506:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143953	Chr17:34475684-34475696 (+)	9,381 bp
Tssr143954	Chr17:34476851-34476862 (+)	10,548 bp
Tssr143955	Chr17:34476908-34476939 (+)	10,615 bp