Gm20496 Gene Detail

Summary

• Symbol
  Gm20496
• Name
  predicted gene 20496

• Feature Type
  lncRNA gene
• IDs
  MGI:5141961
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:34418290-34424423 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141961	lncRNA gene	Chr17:34418290-34424423 (-)
129S1/SvImJ	ENSMUSG00200051675	lncRNA gene	Chr17:30121408-30127538 (-)
A/J	ENSMUSG00195047364	lncRNA gene	Chr17:30986522-30992742 (-)
AKR/J	ENSMUSG00220054020	lncRNA gene	Chr17:30014161-30020378 (-)
BALB/cJ	ENSMUSG00180044543	lncRNA gene	Chr17:30375625-30381789 (-)
C3H/HeJ	ENSMUSG00175054024	lncRNA gene	Chr17:29900327-29906545 (-)
C57BL/6NJ	ENSMUSG00215054403	lncRNA gene	Chr17:29961585-29967717 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003017	antisense lncRNA gene	Chr17:30531196-30536806 (-)
CAST/EiJ	ENSTCUG00005052439	lncRNA gene	Chr17:30946959-30952644 (-)
CBA/J	ENSMUSG00210051244	lncRNA gene	Chr17:29722429-29728647 (-)
DBA/2J	ENSMUSG00185054869	lncRNA gene	Chr17:32394905-32401067 (-)
FVB/NJ	ENSMUSG00205053504	lncRNA gene	Chr17:30250935-30257058 (-)
JF1/MsJ	ENSUMUG00000057717	lncRNA gene	Chr17:31658887-31664757 (-)
LP/J	ENSMUSG00230054788	lncRNA gene	Chr17:33519750-33525883 (-)
NOD/ShiLtJ	ENSMUSG00190054444	lncRNA gene	Chr17:29874674-29880375 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010053529	lncRNA gene	Chr17:29511028-29516917 (-)
SPRET/EiJ	ENSMSPG00010051012	lncRNA gene	Chr17:30643939-30649791 (-)
WSB/EiJ	ENSIUOG00005051499	lncRNA gene	Chr17:30578946-30584788 (-)

Homology

• Gene Tree
  Gm20496
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000092550 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092550	Ensembl Gene Model | MGI Sequence Detail	6134	C57BL/6J
transcript	ENSMUST00000173770	Ensembl | MGI Sequence Detail	523	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm20496:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147541	Chr17:34420411-34420427 (-)	4,004 bp