Gm20492 Gene Detail

Summary

• Symbol
  Gm20492
• Name
  predicted gene 20492

• Feature Type
  lncRNA gene
• IDs
  MGI:5141957
  NCBI Gene: 102632786
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:127124354-127125708 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 74.50 cM

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141957	lncRNA gene	Chr10:127124354-127125708 (+)
129S1/SvImJ	ENSMUSG00200013528	lncRNA gene	Chr10:123477340-123478676 (+)
A/J	ENSMUSG00195018080	lncRNA gene	Chr10:123941475-123942812 (+)
AKR/J	ENSMUSG00220006507	lncRNA gene	Chr10:123545952-123547291 (+)
BALB/cJ	ENSMUSG00180011458	lncRNA gene	Chr10:123932538-123933876 (+)
C3H/HeJ	ENSMUSG00175006281	lncRNA gene	Chr10:123931233-123932566 (+)
C57BL/6NJ	ENSMUSG00215024634	lncRNA gene	Chr10:123542549-123543886 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013282	unclassified non-coding RNA gene	Chr10:119642700-119643881 (+)
CAST/EiJ	ENSTCUG00005042087	lncRNA gene	Chr10:122910620-122911953 (+)
CBA/J	ENSMUSG00210009298	lncRNA gene	Chr10:123755425-123756760 (+)
DBA/2J	ENSMUSG00185027822	lncRNA gene	Chr10:123907536-123908871 (+)
FVB/NJ	ENSMUSG00205026445	lncRNA gene	Chr10:123152120-123153455 (+)
JF1/MsJ	ENSUMUG00000045888	lncRNA gene	Chr10:125202940-125204271 (+)
LP/J	ENSMUSG00230033684	lncRNA gene	Chr10:125824576-125825912 (+)
NOD/ShiLtJ	ENSMUSG00190016600	lncRNA gene	Chr10:123974599-123975934 (+)
NZO/HlLtJ	ENSMUSG00225037559	lncRNA gene	Chr10:130025220-130026556 (+)
PWK/PhJ	ENSLUMG00010010424	lncRNA gene	Chr10:123663152-123664482 (+)
SPRET/EiJ	ENSMSPG00010039034	lncRNA gene	Chr10:125613401-125614738 (+)
WSB/EiJ	ENSIUOG00005008993	lncRNA gene	Chr10:123541734-123543069 (+)

Homology

• Gene Tree
  Gm20492
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000092593 (Evidence)
• NCBI Gene
  102632786

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092593	Ensembl Gene Model | MGI Sequence Detail	1355	C57BL/6J
transcript	ENSMUST00000269622	Ensembl | MGI Sequence Detail	493	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20492:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96176	Chr10:127123949-127123954 (+)	-402 bp
Tssr96177	Chr10:127124359-127124390 (+)	21 bp
Tssr96178	Chr10:127124397-127124420 (+)	55 bp
Tssr3392	Chr10:127124779-127124820 (+)	446 bp