Gm20478 Gene Detail

Summary

• Symbol
  Gm20478
• Name
  predicted gene 20478

• Feature Type
  lncRNA gene
• IDs
  MGI:5141943
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36478684-36499178 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.98 cM

Strain
Comparison

• SNPs within 2kb
  473 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141943	lncRNA gene	Chr17:36478684-36499178 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195049127	lncRNA gene	Chr17:33068768-33072769 (+)
AKR/J	ENSMUSG00220052289	lncRNA gene	Chr17:31954092-31957915 (+)
BALB/cJ	ENSMUSG00180043140	lncRNA gene	Chr17:32582477-32586300 (+)
C3H/HeJ	ENSMUSG00175043757	lncRNA gene	Chr17:31839910-31843733 (+)
C57BL/6NJ	ENSMUSG00215053737	lncRNA gene	Chr17:31908779-31912602 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003015	antisense lncRNA gene	Chr17:30335655-32934929 (+)
CAST/EiJ	ENSTCUG00005052456	lncRNA gene	Chr17:32988391-32991536 (+)
CBA/J	ENSMUSG00210052360	lncRNA gene	Chr17:31661910-31665733 (+)
DBA/2J	ENSMUSG00185054954	lncRNA gene	Chr17:34601605-34605428 (+)
FVB/NJ	ENSMUSG00205053472	lncRNA gene	Chr17:32124960-32128961 (+)
JF1/MsJ	ENSUMUG00000057980	lncRNA gene	Chr17:33498382-33502358 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225054991	lncRNA gene	Chr17:37665937-37669760 (+)
PWK/PhJ	ENSLUMG00010043787	lncRNA gene	Chr17:31364432-31368413 (+)
SPRET/EiJ	ENSMSPG00010051304	lncRNA gene	Chr17:32663787-32667526 (+)
WSB/EiJ	ENSIUOG00005051760	lncRNA gene	Chr17:32590720-32593964 (+)

Homology

• Gene Tree
  Gm20478
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  5
• Targeted
  1
• Genomic Mutations
  1 involving Gm20478
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000092474 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092474	Ensembl Gene Model | MGI Sequence Detail	20495	C57BL/6J
transcript	ENSMUST00000292115	Ensembl | MGI Sequence Detail	1462	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm20478:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144508	Chr17:36478498-36478526 (+)	-172 bp