Gm20474 Pseudogene Detail

Summary

• Symbol
  Gm20474
• Name
  predicted gene 20474
• Synonyms
  Gm4109

• Feature Type
  pseudogene
• IDs
  MGI:5141939
  NCBI Gene: 105242446
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:23618529-23623982 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141939	pseudogene	Chr12:23618529-23623982 (-)
129S1/SvImJ	ENSMUSG00200023415	pseudogene	Chr12:15353898-15396760 (+)
A/J	ENSMUSG00195019682	pseudogene	Chr12:17636320-17697958 (+)
AKR/J	ENSMUSG00220027275	pseudogene	Chr12:16463232-16524905 (-)
BALB/cJ	ENSMUSG00180010606	pseudogene	Chr12:17211752-17227218 (-)
C3H/HeJ	ENSMUSG00175005962	pseudogene	Chr12:15046253-15064712 (+)
C57BL/6NJ	ENSMUSG00215005997	pseudogene	Chr12:15672896-15715745 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005817	pseudogene	Chr12:15505847-15557289 (-)
CBA/J	ENSMUSG00210008188	pseudogene	Chr12:16065713-16122648 (+)
DBA/2J	ENSMUSG00185004480	pseudogene	Chr12:18483611-18489099 (+)
DBA/2J	ENSMUSG00185003876	pseudogene	Chr12:17729963-17786224 (-)
FVB/NJ	ENSMUSG00205002107	pseudogene	Chr12:16928906-16985882 (-)
JF1/MsJ	ENSUMUG00000009252	pseudogene	Chr12:15856363-15900887 (+)
LP/J	ENSMUSG00230007290	pseudogene	Chr12:24696657-24752921 (-)
LP/J	ENSMUSG00230007773	pseudogene	Chr12:20185853-20191352 (-)
LP/J	ENSMUSG00230008065	pseudogene	Chr12:25450223-25455713 (+)
NOD/ShiLtJ	ENSMUSG00190008399	pseudogene	Chr12:1041796-1082517 (-)
NZO/HlLtJ	ENSMUSG00225035187	pseudogene	Chr12:22388034-22393533 (-)
NZO/HlLtJ	ENSMUSG00225034328	pseudogene	Chr12:26879763-26936022 (-)
NZO/HlLtJ	ENSMUSG00225035411	pseudogene	Chr12:27633296-27638786 (+)
PWK/PhJ	ENSLUMG00010004589	pseudogene	Chr12:17324035-17371342 (-)
SPRET/EiJ	ENSMSPG00010003155	pseudogene	Chr12:17730806-17743362 (+)
WSB/EiJ	ENSIUOG00005001699	pseudogene	Chr12:16816692-16874099 (+)

Homology

• Gene Tree
  Gm20474
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000095564 (Evidence)
• NCBI Gene
  105242446

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095564	Ensembl Gene Model | MGI Sequence Detail	5454	C57BL/6J
transcript	ENSMUST00000180089	Ensembl | MGI Sequence Detail	596	Not Applicable

Other
Accession IDs

MGI:3782285

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;