Gm20472 Pseudogene Detail

Summary

• Symbol
  Gm20472
• Name
  predicted gene 20472
• Synonyms
  Gm6950

• Feature Type
  pseudogene
• IDs
  MGI:5141937
  NCBI Gene: 629133
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:23326086-23365349 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141937	pseudogene	Chr12:23271228-23365359 (-)
129S1/SvImJ	ENSMUSG00200023876	pseudogene	Chr12:15306035-15355809 (+)
A/J	ENSMUSG00195022106	pseudogene	Chr12:17892737-17950623 (-)
AKR/J	ENSMUSG00220028481	pseudogene	Chr12:16053940-16150155 (+)
BALB/cJ	ENSMUSG00180010911	pseudogene	Chr12:17012774-17067437 (-)
C3H/HeJ	ENSMUSG00175006218	pseudogene	Chr12:15046249-15048148 (+)
C57BL/6NJ	ENSMUSG00215006106	pseudogene	Chr12:14900070-14987452 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006489	pseudogene	Chr12:14573920-14669458 (+)
CBA/J	ENSMUSG00210007531	protein coding gene	Chr12:15595200-16390116 (-)
CBA/J	ENSMUSG00210007895	pseudogene	Chr12:16295996-16390002 (-)
DBA/2J	ENSMUSG00185003615	protein coding gene	Chr12:17355863-17525987 (-)
DBA/2J	ENSMUSG00185003813	pseudogene	Chr12:17431954-17525947 (-)
FVB/NJ	ENSMUSG00205002101	pseudogene	Chr12:14839733-14889519 (+)
JF1/MsJ	ENSUMUG00000007692	pseudogene	Chr12:22186725-22280814 (-)
LP/J	ENSMUSG00230007299	pseudogene	Chr12:24398668-24492663 (-)
LP/J	ENSMUSG00230006477	protein coding gene	Chr12:24454176-24492478 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225034344	pseudogene	Chr12:26581760-26675749 (-)
NZO/HlLtJ	ENSMUSG00225033812	protein coding gene	Chr12:26637266-26675564 (-)
PWK/PhJ	ENSLUMG00010004704	pseudogene	Chr12:16990931-17119884 (-)
SPRET/EiJ	ENSMSPG00010003120	pseudogene	Chr12:17820681-17873402 (-)
WSB/EiJ	ENSIUOG00005001931	pseudogene	Chr12:15943182-16039458 (+)

Homology

• Gene Tree
  Gm20472
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000092465 (Evidence)
• NCBI Gene
  629133

Representative Sequences			Length	Strain/Species
genomic	629133	NCBI Gene Model | MGI Sequence Detail	39264	C57BL/6J
transcript	NR_169039	RefSeq | MGI Sequence Detail	1502	C57BL/6
polypeptide	B9EKU6	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR001909 Krueppel-associated box
  IPR036051 Krueppel-associated box domain superfamily
  IPR050758 Zinc finger protein, C2H2-type

Other
Accession IDs

MGI:3644179

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;