Gm20468 Gene Detail

Summary

• Symbol
  Gm20468
• Name
  predicted gene 20468

• Feature Type
  lncRNA gene
• IDs
  MGI:5141933
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:27069557-27117661 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.60 cM

Strain
Comparison

• SNPs within 2kb
  1534 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141933	lncRNA gene	Chr17:27069557-27117661 (+)
129S1/SvImJ	ENSMUSG00200053947	lncRNA gene	Chr17:22515575-22563395 (+)
A/J	ENSMUSG00195054596	lncRNA gene	Chr17:23536162-23584104 (+)
AKR/J	ENSMUSG00220053967	lncRNA gene	Chr17:22578098-22626018 (+)
BALB/cJ	ENSMUSG00180051123	lncRNA gene	Chr17:22813682-22861545 (+)
C3H/HeJ	ENSMUSG00175053797	lncRNA gene	Chr17:22571899-22620015 (+)
C57BL/6NJ	ENSMUSG00215054584	lncRNA gene	Chr17:22580036-22627946 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005185	lincRNA gene	Chr17:22705054-22744452 (+)
CAST/EiJ	ENSTCUG00005051955	lncRNA gene	Chr17:23180962-23228868 (+)
CBA/J	ENSMUSG00210051426	lncRNA gene	Chr17:22410718-22458831 (+)
DBA/2J	ENSMUSG00185055299	lncRNA gene	Chr17:24624327-24672286 (+)
FVB/NJ	ENSMUSG00205053546	lncRNA gene	Chr17:22881457-22929371 (+)
JF1/MsJ	ENSUMUG00000058053	lncRNA gene	Chr17:24084457-24132418 (+)
LP/J	ENSMUSG00230055095	lncRNA gene	Chr17:26020065-26067890 (+)
NOD/ShiLtJ	ENSMUSG00190054481	lncRNA gene	Chr17:22511683-22559585 (+)
NZO/HlLtJ	ENSMUSG00225054435	lncRNA gene	Chr17:27950147-27998027 (+)
PWK/PhJ	ENSLUMG00010053466	lncRNA gene	Chr17:21997290-22045316 (+)
SPRET/EiJ	ENSMSPG00010049967	lncRNA gene	Chr17:23313756-23362748 (+)
WSB/EiJ	ENSIUOG00005051999	lncRNA gene	Chr17:23275336-23323298 (+)

Homology

• Gene Tree
  Gm20468
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm20468
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000092539 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092539	Ensembl Gene Model | MGI Sequence Detail	48105	C57BL/6J
transcript	ENSMUST00000358550	Ensembl | MGI Sequence Detail	2537	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm20468:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143271	Chr17:27069640-27069661 (+)	94 bp
Tssr143272	Chr17:27104130-27104158 (+)	34,587 bp