Gm20406 Gene Detail

Summary

• Symbol
  Gm20406
• Name
  predicted gene 20406

• Feature Type
  lncRNA gene
• IDs
  MGI:5141871
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:122533118-122534151 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 70.76 cM

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141871	lncRNA gene	Chr8:122533118-122534151 (+)
129S1/SvImJ	ENSMUSG00200043757	lncRNA gene	Chr8:116869455-116870847 (+)
A/J	ENSMUSG00195027749	lncRNA gene	Chr8:117160876-117161874 (+)
AKR/J	ENSMUSG00220043188	lncRNA gene	Chr8:117351122-117352120 (+)
BALB/cJ	ENSMUSG00180028965	lncRNA gene	Chr8:117206629-117207627 (+)
C3H/HeJ	ENSMUSG00175032438	lncRNA gene	Chr8:117262911-117263909 (+)
C57BL/6NJ	ENSMUSG00215034516	lncRNA gene	Chr8:116837431-116838451 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004159	antisense lncRNA gene	Chr8:112968427-112970003 (+)
CAST/EiJ	ENSTCUG00005036307	lncRNA gene	Chr8:116599523-116600530 (+)
CBA/J	ENSMUSG00210039764	lncRNA gene	Chr8:117190804-117191824 (+)
DBA/2J	ENSMUSG00185037177	lncRNA gene	Chr8:123294883-123295903 (+)
FVB/NJ	ENSMUSG00205040894	lncRNA gene	Chr8:116164121-116165513 (+)
JF1/MsJ	ENSUMUG00000039978	lncRNA gene	Chr8:125599932-125600970 (+)
LP/J	ENSMUSG00230032033	lncRNA gene	Chr8:126922639-126924031 (+)
NOD/ShiLtJ	ENSMUSG00190022289	lncRNA gene	Chr8:117298483-117299875 (+)
NZO/HlLtJ	ENSMUSG00225044154	lncRNA gene	Chr8:130295317-130296337 (+)
PWK/PhJ	ENSLUMG00010039161	lncRNA gene	Chr8:117007124-117008167 (+)
SPRET/EiJ	ENSMSPG00010039985	lncRNA gene	Chr8:119209158-119210173 (+)
WSB/EiJ	ENSIUOG00005031480	lncRNA gene	Chr8:118000006-118001006 (+)

Homology

• Gene Tree
  Gm20406
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000092418 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092418	Ensembl Gene Model | MGI Sequence Detail	1034	C57BL/6J
transcript	ENSMUST00000173993	Ensembl | MGI Sequence Detail	502	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm20406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2715	Chr8:122532237-122532250 (+)	-874 bp
Tssr79826	Chr8:122533125-122533136 (+)	13 bp
Tssr79827	Chr8:122533157-122533171 (+)	46 bp