Gm20383 Gene Detail

Summary

• Symbol
  Gm20383
• Name
  predicted gene, 20383

• Feature Type
  lncRNA gene
• IDs
  MGI:5012568
  NCBI Gene: 100504740
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:81961302-81969394 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 35.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012568	lncRNA gene	Chr6:81961302-81969407 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006997	lincRNA gene	Chr6:82956144-82964161 (+)
A/J	MGP_AJ_G0006993	lincRNA gene	Chr6:79763462-79771486 (+)
AKR/J	MGP_AKRJ_G0006961	lincRNA gene	Chr6:82039120-82047135 (+)
BALB/cJ	MGP_BALBcJ_G0006969	lincRNA gene	Chr6:79791809-79800276 (+)
C3H/HeJ	MGP_C3HHeJ_G0006955	lincRNA gene	Chr6:102287169-102297648 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007133	lincRNA gene	Chr6:85201981-85211146 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006373	lincRNA gene	Chr6:78192000-78200095 (+)
CAST/EiJ	MGP_CASTEiJ_G0006827	lincRNA gene	Chr6:82054844-82063851 (+)
CBA/J	MGP_CBAJ_G0006894	lincRNA gene	Chr6:88588952-88596949 (+)
DBA/2J	MGP_DBA2J_G0006914	lincRNA gene	Chr6:79071663-79080463 (+)
FVB/NJ	MGP_FVBNJ_G0006938	lincRNA gene	Chr6:78319736-78328083 (+)
LP/J	MGP_LPJ_G0006999	lincRNA gene	Chr6:82939848-82948646 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006918	lincRNA gene	Chr6:92915810-92923811 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007138	lincRNA gene	Chr6:81883551-81891644 (+)
PWK/PhJ	MGP_PWKPhJ_G0006766	lincRNA gene	Chr6:77979656-77986920 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006676	lincRNA gene	Chr6:80751713-80759741 (+)
WSB/EiJ	MGP_WSBEiJ_G0006883	lincRNA gene	Chr6:82323530-82332877 (+)

Homology

• Gene Tree
  Gm20383
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  2 involving Gm20383
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000107412 (Evidence)
• NCBI Gene
  100504740

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107412	Ensembl Gene Model | MGI Sequence Detail	8093	C57BL/6J
transcript	ENSMUST00000203799	Ensembl | MGI Sequence Detail	1227	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)