Gm20268 Gene Detail

Summary

• Symbol
  Gm20268
• Name
  predicted gene, 20268

• Feature Type
  lncRNA gene
• IDs
  MGI:5012453
  NCBI Gene: 100504525
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:101083493-101102927 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  754 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012453	lncRNA gene	Chr1:101083427-101102927 (+)
129S1/SvImJ	ENSMUSG00200000236	lncRNA gene	Chr1:98277866-98297222 (+)
A/J	ENSMUSG00195000334	lncRNA gene	Chr1:97790412-97809763 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180005762	lncRNA gene	Chr1:98098008-98117363 (+)
C3H/HeJ	ENSMUSG00175005596	lncRNA gene	Chr1:98004044-98023394 (+)
C57BL/6NJ	ENSMUSG00215000394	lncRNA gene	Chr1:98016441-98035833 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000133	lncRNA gene	Chr1:97474958-97494310 (+)
CBA/J	ENSMUSG00210000082	lncRNA gene	Chr1:97862219-97881570 (+)
DBA/2J	ENSMUSG00185008508	lncRNA gene	Chr1:102324038-102343400 (+)
FVB/NJ	ENSMUSG00205000952	lncRNA gene	Chr1:97209100-97228453 (+)
JF1/MsJ	ENSUMUG00000022749	lncRNA gene	Chr1:101019691-101039054 (+)
LP/J	ENSMUSG00230024406	lncRNA gene	Chr1:101587152-101606513 (+)
NOD/ShiLtJ	ENSMUSG00190000648	lncRNA gene	Chr1:97915816-97935176 (+)
NZO/HlLtJ	ENSMUSG00225000437	lncRNA gene	Chr1:105488762-105508112 (+)
PWK/PhJ	ENSLUMG00010006470	lncRNA gene	Chr1:97428338-97454060 (+)
SPRET/EiJ	ENSMSPG00010000872	lncRNA gene	Chr1:99660858-99675540 (+)
WSB/EiJ	ENSIUOG00005000311	lncRNA gene	Chr1:97573589-97592992 (+)

Homology

• Gene Tree
  Gm20268
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm20268
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000100684 (Evidence)
• NCBI Gene
  100504525

Representative Sequences			Length	Strain/Species
genomic	100504525	NCBI Gene Model | MGI Sequence Detail	19435	C57BL/6J
transcript	NR_037989	RefSeq | MGI Sequence Detail	886	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm20268:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8245	Chr1:101083488-101083507 (+)	5 bp
Tssr8246	Chr1:101083513-101083529 (+)	28 bp