Gm20257 Pseudogene Detail

Summary

• Symbol
  Gm20257
• Name
  predicted gene, 20257

• Feature Type
  pseudogene
• IDs
  MGI:5012442
  NCBI Gene: 100504501
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:58694104-58694233 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 29.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012442	pseudogene	Chr1:58691800-58694990 (+)
129S1/SvImJ	ENSMUSG00200018793	pseudogene	Chr1:56195341-56198586 (+)
A/J	ENSMUSG00195031381	pseudogene	Chr1:55728572-55731815 (+)
AKR/J	ENSMUSG00220041637	pseudogene	Chr1:55818747-55821990 (+)
BALB/cJ	ENSMUSG00180014580	pseudogene	Chr1:55976416-55979650 (+)
C3H/HeJ	ENSMUSG00175001151	pseudogene	Chr1:56106072-56109311 (+)
C57BL/6NJ	ENSMUSG00215035363	pseudogene	Chr1:56037859-56041100 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036940	pseudogene	Chr1:52588606-52588735 (+)
CAST/EiJ	ENSTCUG00005013972	pseudogene	Chr1:55880667-55883894 (+)
CBA/J	ENSMUSG00210054137	pseudogene	Chr1:55790947-55794168 (+)
DBA/2J	ENSMUSG00185055822	pseudogene	Chr1:56910639-56913860 (+)
FVB/NJ	ENSMUSG00205022391	pseudogene	Chr1:55751891-55755135 (+)
JF1/MsJ	ENSUMUG00000049322	pseudogene	Chr1:55871594-55874793 (+)
LP/J	ENSMUSG00230030469	pseudogene	Chr1:56915898-56919145 (+)
NOD/ShiLtJ	ENSMUSG00190039087	pseudogene	Chr1:55957576-55960810 (+)
NZO/HlLtJ	ENSMUSG00225009482	pseudogene	Chr1:60118964-60122185 (+)
PWK/PhJ	ENSLUMG00010026443	pseudogene	Chr1:55405493-55408647 (+)
SPRET/EiJ	ENSMSPG00010027282	pseudogene	Chr1:57260536-57263232 (+)
WSB/EiJ	ENSIUOG00005020780	pseudogene	Chr1:55582583-55585817 (+)

Homology

• Gene Tree
  Gm20257
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20257
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000102059 (Evidence)
• NCBI Gene
  100504501

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102059	Ensembl Gene Model | MGI Sequence Detail	130	C57BL/6J
transcript	ENSMUST00000188643	Ensembl | MGI Sequence Detail	130	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;