Gm20208 Gene Detail

Summary

• Symbol
  Gm20208
• Name
  predicted gene, 20208

• Feature Type
  lncRNA gene
• IDs
  MGI:5012393
  NCBI Gene: 102634058
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:29576957-29581109 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 11.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012393	lncRNA gene	Chr12:29557763-29585603 (-)
129S1/SvImJ	ENSMUSG00200016151	lncRNA gene	Chr12:21373892-21381861 (-)
A/J	ENSMUSG00195022426	lncRNA gene	Chr12:24065225-24073184 (-)
AKR/J	ENSMUSG00220034200	lncRNA gene	Chr12:22034443-22042415 (-)
BALB/cJ	ENSMUSG00180028430	lncRNA gene	Chr12:23064372-23072331 (-)
C3H/HeJ	ENSMUSG00175022335	lncRNA gene	Chr12:26097885-26105842 (-)
C57BL/6NJ	ENSMUSG00215025654	lncRNA gene	Chr12:22500916-22508907 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010780	lncRNA gene	Chr12:22895272-22903257 (-)
CBA/J	ENSMUSG00210008862	lncRNA gene	Chr12:22587250-22595209 (-)
DBA/2J	ENSMUSG00185015575	lncRNA gene	Chr12:24607039-24615013 (-)
FVB/NJ	ENSMUSG00205006566	lncRNA gene	Chr12:22630863-22638790 (-)
JF1/MsJ	ENSUMUG00000007354	lncRNA gene	Chr12:28810384-28818332 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190019565	lncRNA gene	Chr12:21539175-21547098 (-)
NZO/HlLtJ	ENSMUSG00225031445	lncRNA gene	Chr12:33762416-33770383 (-)
PWK/PhJ	ENSLUMG00010011246	lncRNA gene	Chr12:23049812-23057827 (-)
SPRET/EiJ	ENSMSPG00010006316	lncRNA gene	Chr12:23488117-23496164 (-)
WSB/EiJ	ENSIUOG00005020565	lncRNA gene	Chr12:22246182-22254124 (-)

Homology

• Gene Tree
  Gm20208
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  4

• Ensembl
  ENSMUSG00000112390 (Evidence)
• NCBI Gene
  102634058

Representative Sequences			Length	Strain/Species
genomic	102634058	NCBI Gene Model | MGI Sequence Detail	4153	C57BL/6J
transcript	AK138505	GenBank | ENA | DDBJ | MGI Sequence Detail	1529	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm20208:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116026	Chr12:29581106-29581142 (-)	-15 bp