Gm20162 Pseudogene Detail

Summary

• Symbol
  Gm20162
• Name
  predicted gene, 20162

• Feature Type
  pseudogene
• IDs
  MGI:5012347
  NCBI Gene: 100504306
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:37567296-37568166 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012347	pseudogene	Chr18:37566305-37568476 (+)
129S1/SvImJ	ENSMUSG00200044774	pseudogene	Chr18:34556509-34557379 (+)
A/J	ENSMUSG00195038776	pseudogene	Chr18:34718016-34718886 (+)
AKR/J	ENSMUSG00220017715	pseudogene	Chr18:34699632-34700502 (+)
BALB/cJ	ENSMUSG00180021946	pseudogene	Chr18:35167649-35168519 (+)
C3H/HeJ	ENSMUSG00175042311	pseudogene	Chr18:34689746-34690616 (+)
C57BL/6NJ	ENSMUSG00215030334	pseudogene	Chr18:34436818-34437688 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010258	pseudogene	Chr18:34659168-34659993 (+)
CAST/EiJ	ENSTCUG00005025206	pseudogene	Chr18:34308315-34309151 (+)
CBA/J	ENSMUSG00210021711	pseudogene	Chr18:34709656-34710526 (+)
DBA/2J	ENSMUSG00185021307	pseudogene	Chr18:34644304-34645174 (+)
FVB/NJ	ENSMUSG00205037300	pseudogene	Chr18:34361427-34362297 (+)
JF1/MsJ	ENSUMUG00000049168	pseudogene	Chr18:34780498-34781368 (+)
LP/J	ENSMUSG00230048775	pseudogene	Chr18:36753182-36754052 (+)
NOD/ShiLtJ	ENSMUSG00190021745	pseudogene	Chr18:34438048-34438918 (+)
NZO/HlLtJ	ENSMUSG00225047485	pseudogene	Chr18:36659846-36660716 (+)
PWK/PhJ	ENSLUMG00010013235	pseudogene	Chr18:34946723-34947593 (+)
SPRET/EiJ	ENSMSPG00010022419	pseudogene	Chr18:34984129-34984969 (+)
WSB/EiJ	ENSIUOG00005008064	pseudogene	Chr18:34414847-34415717 (+)

Homology

• Gene Tree
  Gm20162
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm20162
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000103483 (Evidence)
• NCBI Gene
  100504306

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103483	Ensembl Gene Model | MGI Sequence Detail	871	C57BL/6J
transcript	ENSMUST00000193629	Ensembl | MGI Sequence Detail	871	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)