Gm20108 Pseudogene Detail

Summary

• Symbol
  Gm20108
• Name
  predicted gene, 20108

• Feature Type
  pseudogene
• IDs
  MGI:5012293
  NCBI Gene: 102636776
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:70174132-70174284 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 36.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012293	pseudogene	Chr10:70174132-70174306 (+)
129S1/SvImJ	ENSMUSG00200017750	pseudogene	Chr10:66868628-66868780 (+)
A/J	ENSMUSG00195006204	pseudogene	Chr10:67165907-67166059 (+)
AKR/J	ENSMUSG00220029435	pseudogene	Chr10:66834727-66834879 (+)
BALB/cJ	ENSMUSG00180007968	pseudogene	Chr10:67200332-67200484 (+)
C3H/HeJ	ENSMUSG00175013260	pseudogene	Chr10:67047144-67047296 (+)
C57BL/6NJ	ENSMUSG00215004103	pseudogene	Chr10:66809732-66809884 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026880	pseudogene	Chr10:66759310-66759462 (+)
CBA/J	ENSMUSG00210009865	pseudogene	Chr10:66921766-66921918 (+)
DBA/2J	ENSMUSG00185020938	pseudogene	Chr10:67270849-67271001 (+)
FVB/NJ	ENSMUSG00205007737	pseudogene	Chr10:67012763-67012915 (+)
JF1/MsJ	ENSUMUG00000024649	pseudogene	Chr10:68463734-68463886 (+)
LP/J	ENSMUSG00230019965	pseudogene	Chr10:69040907-69041059 (+)
NOD/ShiLtJ	ENSMUSG00190007946	pseudogene	Chr10:67266923-67267075 (+)
NZO/HlLtJ	ENSMUSG00225047734	pseudogene	Chr10:73331523-73331675 (+)
PWK/PhJ	ENSLUMG00010007863	pseudogene	Chr10:66857198-66857350 (+)
SPRET/EiJ	ENSMSPG00010023378	pseudogene	Chr10:68543090-68543245 (+)
WSB/EiJ	ENSIUOG00005034729	pseudogene	Chr10:66785129-66785281 (+)

Homology

• Gene Tree
  Gm20108
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20108
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000112676 (Evidence)
• NCBI Gene
  102636776

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112676	Ensembl Gene Model | MGI Sequence Detail	153	C57BL/6J
transcript	ENSMUST00000219977	Ensembl | MGI Sequence Detail	153	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87