Gm20089 Gene Detail

Summary

• Symbol
  Gm20089
• Name
  predicted gene, 20089

• Feature Type
  lncRNA gene
• IDs
  MGI:5012274
  NCBI Gene: 100504153
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:51888362-51897496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 22.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  324 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012274	lncRNA gene	Chr3:51888362-51897496 (+)
129S1/SvImJ	ENSMUSG00200000511	lncRNA gene	Chr3:48718441-48727526 (+)
A/J	ENSMUSG00195000769	lncRNA gene	Chr3:48675941-48685087 (+)
AKR/J	ENSMUSG00220015904	lncRNA gene	Chr3:48730473-48739613 (+)
BALB/cJ	ENSMUSG00180000635	lncRNA gene	Chr3:48753885-48768518 (+)
C3H/HeJ	ENSMUSG00175002095	lncRNA gene	Chr3:48589753-48598895 (+)
C57BL/6NJ	ENSMUSG00215000676	lncRNA gene	Chr3:49023461-49032601 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003359	antisense lncRNA gene	Chr3:45619822-45632635 (+)
CAST/EiJ	ENSTCUG00005009684	lncRNA gene	Chr3:48396825-48405941 (+)
CBA/J	ENSMUSG00210000947	lncRNA gene	Chr3:48701900-48711043 (+)
DBA/2J	ENSMUSG00185000366	lncRNA gene	Chr3:48938971-48948115 (+)
FVB/NJ	ENSMUSG00205009405	lncRNA gene	Chr3:47921420-47930509 (+)
JF1/MsJ	ENSUMUG00000024893	lncRNA gene	Chr3:48358629-48367705 (+)
LP/J	ENSMUSG00230000338	lncRNA gene	Chr3:50890618-50899701 (+)
NOD/ShiLtJ	ENSMUSG00190000447	lncRNA gene	Chr3:49068778-49077916 (+)
NZO/HlLtJ	ENSMUSG00225018006	lncRNA gene	Chr3:53513390-53522530 (+)
PWK/PhJ	ENSLUMG00010009924	lncRNA gene	Chr3:48522807-48531856 (+)
SPRET/EiJ	ENSMSPG00010007489	lncRNA gene	Chr3:49181363-49190568 (+)
WSB/EiJ	ENSIUOG00005000577	lncRNA gene	Chr3:48860453-48869584 (+)

Homology

• Gene Tree
  Gm20089
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm20089
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104161 (Evidence)
• NCBI Gene
  100504153

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104161	Ensembl Gene Model | MGI Sequence Detail	9135	C57BL/6J
transcript	ENSMUST00000192391	Ensembl | MGI Sequence Detail	2084	Not Applicable

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426