Gm20083 Gene Detail

Summary

• Symbol
  Gm20083
• Name
  predicted gene, 20083
• Synonyms
  Gm44670

• Feature Type
  lncRNA gene
• IDs
  MGI:5012268
  NCBI Gene: 100504141
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:72833692-72839636 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 41.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  269 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012268	lncRNA gene	Chr7:72833669-72842180 (+)
129S1/SvImJ	ENSMUSG00200013014	lncRNA gene	Chr7:59596588-59600314 (+)
A/J	ENSMUSG00195015172	lncRNA gene	Chr7:63990225-63993951 (+)
AKR/J	ENSMUSG00220020826	lncRNA gene	Chr7:57536022-57539748 (+)
BALB/cJ	ENSMUSG00180004915	lncRNA gene	Chr7:60699951-60703677 (+)
C3H/HeJ	ENSMUSG00175022252	lncRNA gene	Chr7:61491959-61495685 (+)
C57BL/6NJ	ENSMUSG00215020395	lncRNA gene	Chr7:60629378-60633101 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006559	lincRNA gene	Chr7:75690305-75693976 (+)
CAST/EiJ	ENSTCUG00005004429	lncRNA gene	Chr7:64126508-64130236 (+)
CBA/J	ENSMUSG00210024338	lncRNA gene	Chr7:61351503-61355229 (+)
DBA/2J	ENSMUSG00185001313	lncRNA gene	Chr7:65673167-65676893 (+)
FVB/NJ	ENSMUSG00205025190	lncRNA gene	Chr7:61330720-61334443 (+)
JF1/MsJ	ENSUMUG00000010017	lncRNA gene	Chr7:70395955-70399679 (+)
LP/J	ENSMUSG00230016887	lncRNA gene	Chr7:71733786-71737512 (+)
NOD/ShiLtJ	ENSMUSG00190019107	lncRNA gene	Chr7:61451359-61455085 (+)
NZO/HlLtJ	ENSMUSG00225018207	lncRNA gene	Chr7:70000655-70004378 (+)
PWK/PhJ	ENSLUMG00010019028	lncRNA gene	Chr7:59939685-59943411 (+)
SPRET/EiJ	ENSMSPG00010003312	lncRNA gene	Chr7:60381441-60385137 (+)
WSB/EiJ	ENSIUOG00005023114	lncRNA gene	Chr7:61809119-61812844 (+)

Homology

• Gene Tree
  Gm20083
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm20083
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  12

• Ensembl
  ENSMUSG00000108778 (Evidence)
• NCBI Gene
  100504141

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108778	Ensembl Gene Model | MGI Sequence Detail	5945	C57BL/6J
transcript	ENSMUST00000206663	Ensembl | MGI Sequence Detail	1738	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5753246

References

• Summaries
  All 18

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm20083:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67187	Chr7:72835514-72835523 (+)	1,827 bp
Tssr67188	Chr7:72835546-72835557 (+)	1,860 bp