Gm20082 Pseudogene Detail

Summary

• Symbol
  Gm20082
• Name
  predicted gene, 20082

• Feature Type
  pseudogene
• IDs
  MGI:5012267
  NCBI Gene: 102637234
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:15689693-15690023 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012267	pseudogene	Chr16:15689589-15690074 (+)
129S1/SvImJ	ENSMUSG00200048864	pseudogene	Chr16:12686331-12686661 (+)
A/J	ENSMUSG00195035453	pseudogene	Chr16:12242975-12243305 (+)
AKR/J	ENSMUSG00220046650	pseudogene	Chr16:12555565-12555895 (+)
BALB/cJ	ENSMUSG00180043253	pseudogene	Chr16:12484580-12484910 (+)
C3H/HeJ	ENSMUSG00175051214	pseudogene	Chr16:12629339-12629669 (+)
C57BL/6NJ	ENSMUSG00215041736	pseudogene	Chr16:12350431-12350761 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046435	pseudogene	Chr16:12511462-12511792 (+)
CBA/J	ENSMUSG00210048056	pseudogene	Chr16:12645673-12646003 (+)
DBA/2J	ENSMUSG00185034089	pseudogene	Chr16:12591813-12592143 (+)
FVB/NJ	ENSMUSG00205046767	pseudogene	Chr16:12601165-12601495 (+)
JF1/MsJ	ENSUMUG00000054971	pseudogene	Chr16:12656025-12656355 (+)
LP/J	ENSMUSG00230046126	pseudogene	Chr16:15169763-15170093 (+)
NOD/ShiLtJ	ENSMUSG00190050200	pseudogene	Chr16:12731788-12732118 (+)
NZO/HlLtJ	ENSMUSG00225032275	pseudogene	Chr16:18415537-18415867 (+)
PWK/PhJ	ENSLUMG00010050441	pseudogene	Chr16:12544013-12544343 (+)
SPRET/EiJ	ENSMSPG00010047886	pseudogene	Chr16:12550504-12550834 (+)
WSB/EiJ	ENSIUOG00005045064	pseudogene	Chr16:12697563-12697893 (+)

Homology

• Gene Tree
  Gm20082
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116102 (Evidence)
• NCBI Gene
  102637234

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116102	Ensembl Gene Model | MGI Sequence Detail	331	C57BL/6J
transcript	ENSMUST00000230053	Ensembl | MGI Sequence Detail	331	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;