Gm20058 Pseudogene Detail

Summary

• Symbol
  Gm20058
• Name
  predicted gene, 20058

• Feature Type
  pseudogene
• IDs
  MGI:5012243
  NCBI Gene: 100504091
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:123201868-123204500 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 53.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012243	pseudogene	Chr1:123201868-123204500 (+)
129S1/SvImJ	ENSMUSG00200002126	pseudogene	Chr1:120718517-120721150 (+)
A/J	ENSMUSG00195004729	pseudogene	Chr1:119879525-119882158 (+)
AKR/J	ENSMUSG00220025743	pseudogene	Chr1:119736333-119738965 (+)
BALB/cJ	ENSMUSG00180013061	pseudogene	Chr1:120398169-120400802 (+)
C3H/HeJ	ENSMUSG00175020325	pseudogene	Chr1:120161989-120164622 (+)
C57BL/6NJ	ENSMUSG00215014483	pseudogene	Chr1:120118484-120121116 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009258	pseudogene	Chr1:115169741-115173722 (+)
CAST/EiJ	ENSTCUG00005006665	pseudogene	Chr1:119103383-119106008 (+)
CBA/J	ENSMUSG00210001396	pseudogene	Chr1:120006162-120008795 (+)
DBA/2J	ENSMUSG00185002270	pseudogene	Chr1:124431416-124434048 (+)
FVB/NJ	ENSMUSG00205012782	pseudogene	Chr1:119467611-119470243 (+)
JF1/MsJ	ENSUMUG00000003222	pseudogene	Chr1:123549353-123551983 (+)
LP/J	ENSMUSG00230001534	pseudogene	Chr1:123923481-123926114 (+)
NOD/ShiLtJ	ENSMUSG00190006722	pseudogene	Chr1:119995223-119997855 (+)
NZO/HlLtJ	ENSMUSG00225005220	pseudogene	Chr1:127677510-127680143 (+)
PWK/PhJ	ENSLUMG00010015009	pseudogene	Chr1:119171001-119173619 (+)
SPRET/EiJ	ENSMSPG00010017897	pseudogene	Chr1:121880681-121883174 (+)
WSB/EiJ	ENSIUOG00005003284	pseudogene	Chr1:119853342-119855972 (+)

Homology

• Gene Tree
  Gm20058
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm20058
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100525 (Evidence)
• NCBI Gene
  100504091

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100525	Ensembl Gene Model | MGI Sequence Detail	2633	C57BL/6J
transcript	ENSMUST00000186939	Ensembl | MGI Sequence Detail	284	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45