Gm20052 Gene Detail

Summary

• Symbol
  Gm20052
• Name
  predicted gene, 20052
• Synonyms
  Gm34055

• Feature Type
  lncRNA gene
• IDs
  MGI:5012237
  NCBI Gene: 102637176
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:38051116-38055267 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 20.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012237	lncRNA gene	Chr5:38014584-38055267 (+)
129S1/SvImJ	ENSMUSG00200032633	lncRNA gene	Chr5:33501049-33505194 (+)
A/J	ENSMUSG00195031114	lncRNA gene	Chr5:32962679-32966819 (+)
AKR/J	ENSMUSG00220002486	lncRNA gene	Chr5:32989483-32993623 (+)
BALB/cJ	ENSMUSG00180025335	lncRNA gene	Chr5:32765510-32769650 (+)
C3H/HeJ	ENSMUSG00175020424	lncRNA gene	Chr5:34749637-34753777 (+)
C57BL/6NJ	ENSMUSG00215006070	lncRNA gene	Chr5:33499582-33503727 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006016	lincRNA gene	Chr5:32765477-32769618 (+)
CAST/EiJ	ENSTCUG00005025237	lncRNA gene	Chr5:32963134-32967270 (+)
CBA/J	ENSMUSG00210005645	lncRNA gene	Chr5:33711627-33715767 (+)
DBA/2J	ENSMUSG00185018447	lncRNA gene	Chr5:35585055-35589200 (+)
FVB/NJ	ENSMUSG00205021699	lncRNA gene	Chr5:32467488-32471633 (+)
JF1/MsJ	ENSUMUG00000054771	lncRNA gene	Chr5:40172473-40176615 (+)
LP/J	ENSMUSG00230002970	lncRNA gene	Chr5:40228136-40232281 (+)
NOD/ShiLtJ	ENSMUSG00190003211	lncRNA gene	Chr5:32772067-32776212 (+)
NZO/HlLtJ	ENSMUSG00225017797	lncRNA gene	Chr5:45390480-45394625 (+)
PWK/PhJ	ENSLUMG00010023206	lncRNA gene	Chr5:32849705-32853847 (+)
SPRET/EiJ	ENSMSPG00010039754	lncRNA gene	Chr5:34091902-34096064 (+)
WSB/EiJ	ENSIUOG00005018545	lncRNA gene	Chr5:35677214-35681361 (+)

Homology

• Gene Tree
  Gm20052
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm20052
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000106718 (Evidence)
• NCBI Gene
  102637176

Representative Sequences			Length	Strain/Species
genomic	102637176	NCBI Gene Model | MGI Sequence Detail	4152	C57BL/6J
transcript	NR_153822	RefSeq | MGI Sequence Detail	1531	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5593214

References

• Summaries
  All 24

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707