Gm20043 Gene Detail

Summary

• Symbol
  Gm20043
• Name
  predicted gene, 20043

• Feature Type
  lncRNA gene
• IDs
  MGI:5012228
  NCBI Gene: 100504070
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:15550209-15587685 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 5.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012228	lncRNA gene	Chr13:15550209-15587685 (+)
129S1/SvImJ	ENSMUSG00200014938	lncRNA gene	Chr13:12756709-12794167 (+)
A/J	ENSMUSG00195041031	lncRNA gene	Chr13:11847502-11884978 (+)
AKR/J	ENSMUSG00220031991	lncRNA gene	Chr13:11842209-11880840 (+)
BALB/cJ	ENSMUSG00180039056	lncRNA gene	Chr13:12197109-12234581 (+)
C3H/HeJ	ENSMUSG00175034113	lncRNA gene	Chr13:12298413-12335887 (+)
C57BL/6NJ	ENSMUSG00215036856	lncRNA gene	Chr13:12305525-12343009 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014747	lncRNA gene	Chr13:12417216-12462682 (+)
CBA/J	ENSMUSG00210031182	lncRNA gene	Chr13:12164021-12201491 (+)
DBA/2J	ENSMUSG00185013980	lncRNA gene	Chr13:12858771-12896254 (+)
FVB/NJ	ENSMUSG00205051420	lncRNA gene	Chr13:12071464-12115816 (+)
JF1/MsJ	ENSUMUG00000020097	lncRNA gene	Chr13:12669728-12708628 (+)
LP/J	ENSMUSG00230036739	lncRNA gene	Chr13:22267722-22305198 (+)
NOD/ShiLtJ	ENSMUSG00190023888	lncRNA gene	Chr13:12163877-12201356 (+)
NZO/HlLtJ	ENSMUSG00225032590	lncRNA gene	Chr13:16046128-16083637 (+)
PWK/PhJ	ENSLUMG00010032719	lncRNA gene	Chr13:11618156-11656760 (+)
SPRET/EiJ	ENSMSPG00010021913	lncRNA gene	Chr13:11299222-11337612 (+)
WSB/EiJ	ENSIUOG00005038401	lncRNA gene	Chr13:11505174-11542675 (+)

Homology

• Gene Tree
  Gm20043
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000113410 (Evidence)
• NCBI Gene
  100504070

Representative Sequences			Length	Strain/Species
genomic	100504070	NCBI Gene Model | MGI Sequence Detail	37477	C57BL/6J
transcript	AK135998	GenBank | ENA | DDBJ | MGI Sequence Detail	2566	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9