Gm20033 Gene Detail

Summary

• Symbol
  Gm20033
• Name
  predicted gene, 20033

• Feature Type
  lncRNA gene
• IDs
  MGI:5012218
  NCBI Gene: 105244755
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:64865552-64961486 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 33.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2724 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012218	lncRNA gene	Chr5:64790847-64961791 (-)
129S1/SvImJ	ENSMUSG00200000224	lncRNA gene	Chr5:60481634-60577885 (-)
A/J	ENSMUSG00195000451	lncRNA gene	Chr5:59834925-59946642 (-)
AKR/J	ENSMUSG00220007096	lncRNA gene	Chr5:59972055-60083777 (-)
BALB/cJ	ENSMUSG00180006658	lncRNA gene	Chr5:59620799-59732464 (-)
C3H/HeJ	ENSMUSG00175029752	lncRNA gene	Chr5:61647406-61759136 (-)
C57BL/6NJ	ENSMUSG00215002879	lncRNA gene	Chr5:60410475-60506752 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013728	unclassified non-coding RNA gene	Chr5:58013656-58104952 (-)
CAST/EiJ	ENSTCUG00005000449	lncRNA gene	Chr5:59569617-59666888 (-)
CBA/J	ENSMUSG00210023587	lncRNA gene	Chr5:60560365-60672089 (-)
DBA/2J	ENSMUSG00185005916	lncRNA gene	Chr5:62417830-62529564 (-)
FVB/NJ	ENSMUSG00205011192	lncRNA gene	Chr5:59372190-59484501 (-)
JF1/MsJ	ENSUMUG00000023060	lncRNA gene	Chr5:66903141-66999633 (-)
LP/J	ENSMUSG00230009217	lncRNA gene	Chr5:67094432-67190684 (-)
NOD/ShiLtJ	ENSMUSG00190000441	lncRNA gene	Chr5:59559966-59671809 (-)
NZO/HlLtJ	ENSMUSG00225010678	lncRNA gene	Chr5:72220435-72316823 (-)
PWK/PhJ	ENSLUMG00010004432	lncRNA gene	Chr5:59522638-59626271 (-)
SPRET/EiJ	ENSMSPG00010035431	lncRNA gene	Chr5:61332351-61431652 (-)
WSB/EiJ	ENSIUOG00005018786	lncRNA gene	Chr5:62532090-62635516 (-)

Homology

• Gene Tree
  Gm20033
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  37
• Chemically induced (other)
  2
• Gene trapped
  33
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm20033
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  65
• RefSeq
  1

• Ensembl
  ENSMUSG00000097640 (Evidence)
• NCBI Gene
  105244755

Representative Sequences			Length	Strain/Species
genomic	105244755	NCBI Gene Model | MGI Sequence Detail	95935	C57BL/6J
transcript	NR_188847	RefSeq | MGI Sequence Detail	1157	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 25

  Phenotypes 20
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20033:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51067	Chr5:64961461-64961492 (-)	9 bp