Gm20005 Gene Detail

Summary

• Symbol
  Gm20005
• Name
  predicted gene, 20005
• Synonyms
  Gm43153

• Feature Type
  lncRNA gene
• IDs
  MGI:5012190
  NCBI Gene: 100503999
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:149562197-149571252 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 89.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  352 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012190	lncRNA gene	Chr5:149559868-149572333 (+)
129S1/SvImJ	ENSMUSG00200011436	lncRNA gene	Chr5:143400584-143407843 (+)
A/J	ENSMUSG00195005122	lncRNA gene	Chr5:143016355-143023657 (+)
AKR/J	ENSMUSG00220015569	lncRNA gene	Chr5:142018510-142025802 (+)
BALB/cJ	ENSMUSG00180003339	lncRNA gene	Chr5:143418714-143426015 (+)
C3H/HeJ	ENSMUSG00175012283	lncRNA gene	Chr5:145259501-145266801 (+)
C57BL/6NJ	ENSMUSG00215000112	lncRNA gene	Chr5:142956328-142963613 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010028	lncRNA gene	Chr5:142540156-142547329 (+)
CBA/J	ENSMUSG00210001117	lncRNA gene	Chr5:144146453-144153737 (+)
DBA/2J	ENSMUSG00185041586	lncRNA gene	Chr5:147116589-147123872 (+)
FVB/NJ	ENSMUSG00205000155	lncRNA gene	Chr5:142797594-142804897 (+)
JF1/MsJ	ENSUMUG00000053212	lncRNA gene	Chr5:149610360-149616345 (+)
LP/J	ENSMUSG00230029817	lncRNA gene	Chr5:151117217-151124476 (+)
NOD/ShiLtJ	ENSMUSG00190005942	lncRNA gene	Chr5:142771546-142778846 (+)
NZO/HlLtJ	ENSMUSG00225009209	lncRNA gene	Chr5:158862386-158869668 (+)
PWK/PhJ	ENSLUMG00010000454	lncRNA gene	Chr5:141881002-141888290 (+)
SPRET/EiJ	ENSMSPG00010006551	lncRNA gene	Chr5:144658951-144666274 (+)
WSB/EiJ	ENSIUOG00005014347	lncRNA gene	Chr5:145541646-145548926 (+)

Homology

• Gene Tree
  Gm20005
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000106674 (Evidence)
• NCBI Gene
  100503999

Representative Sequences			Length	Strain/Species
genomic	100503999	NCBI Gene Model | MGI Sequence Detail	9056	C57BL/6J
transcript	AK146146	GenBank | ENA | DDBJ | MGI Sequence Detail	300	BALB/c

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663290

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20005:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49920	Chr5:149560282-149560306 (+)	-1,903 bp
Tssr49921	Chr5:149565042-149565080 (+)	2,864 bp