Gm19994 Pseudogene Detail

Summary

• Symbol
  Gm19994
• Name
  predicted gene, 19994

• Feature Type
  pseudogene
• IDs
  MGI:5012179
  NCBI Gene: 100503976
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:46546240-46546825 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 24.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012179	pseudogene	Chr10:46546240-46546887 (+)
129S1/SvImJ	ENSMUSG00200007548	pseudogene	Chr10:43448937-43449522 (+)
A/J	ENSMUSG00195003111	pseudogene	Chr10:43714669-43715254 (+)
AKR/J	ENSMUSG00220006674	pseudogene	Chr10:43409223-43409808 (+)
BALB/cJ	ENSMUSG00180011916	pseudogene	Chr10:43803674-43804259 (+)
C3H/HeJ	ENSMUSG00175010034	pseudogene	Chr10:43596256-43596841 (+)
C57BL/6NJ	ENSMUSG00215002280	pseudogene	Chr10:43341295-43341880 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008769	pseudogene	Chr10:43731419-43732004 (+)
CBA/J	ENSMUSG00210008348	pseudogene	Chr10:43499327-43499912 (+)
DBA/2J	ENSMUSG00185003242	pseudogene	Chr10:43638374-43638959 (+)
FVB/NJ	ENSMUSG00205005025	pseudogene	Chr10:43550654-43551239 (+)
JF1/MsJ	ENSUMUG00000028066	pseudogene	Chr10:43443229-43443815 (+)
LP/J	ENSMUSG00230006453	pseudogene	Chr10:45442568-45443153 (+)
NOD/ShiLtJ	ENSMUSG00190005635	pseudogene	Chr10:43776981-43777566 (+)
NZO/HlLtJ	ENSMUSG00225018488	pseudogene	Chr10:49728050-49728635 (+)
PWK/PhJ	ENSLUMG00010005095	pseudogene	Chr10:43537626-43538212 (+)
SPRET/EiJ	ENSMSPG00010013007	pseudogene	Chr10:44629456-44630042 (+)
WSB/EiJ	ENSIUOG00005015313	pseudogene	Chr10:43340441-43341026 (+)

Homology

• Gene Tree
  Gm19994
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm19994
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111754 (Evidence)
• NCBI Gene
  100503976

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111754	Ensembl Gene Model | MGI Sequence Detail	586	C57BL/6J
transcript	ENSMUST00000217086	Ensembl | MGI Sequence Detail	586	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87