Gm19880 Pseudogene Detail

Summary

• Symbol
  Gm19880
• Name
  predicted gene, 19880

• Feature Type
  pseudogene
• IDs
  MGI:5012065
  NCBI Gene: 100503763
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:28234197-28234514 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 16.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012065	pseudogene	Chr7:28234099-28235083 (+)
129S1/SvImJ	ENSMUSG00200046148	pseudogene	Chr7:18022541-18022858 (+)
A/J	ENSMUSG00195051425	pseudogene	Chr7:20695817-20696134 (+)
AKR/J	ENSMUSG00220053369	pseudogene	Chr7:23792119-23792436 (-)
BALB/cJ	ENSMUSG00180053950	pseudogene	Chr7:18755377-18755694 (+)
C3H/HeJ	ENSMUSG00175052529	pseudogene	Chr7:19788458-19788775 (+)
C57BL/6NJ	ENSMUSG00215054839	pseudogene	Chr7:17924079-17924396 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052594	pseudogene	Chr7:19722798-19723115 (+)
CBA/J	ENSMUSG00210053724	pseudogene	Chr7:18973051-18973368 (+)
DBA/2J	ENSMUSG00185054898	pseudogene	Chr7:22085743-22086060 (+)
FVB/NJ	ENSMUSG00205052070	pseudogene	Chr7:18760939-18761256 (+)
JF1/MsJ	ENSUMUG00000057668	pseudogene	Chr7:26488740-26489057 (+)
LP/J	ENSMUSG00230053904	pseudogene	Chr7:27256279-27256596 (+)
NOD/ShiLtJ	ENSMUSG00190053267	pseudogene	Chr7:18420033-18420350 (+)
NZO/HlLtJ	ENSMUSG00225027644	pseudogene	Chr7:26099411-26099728 (+)
PWK/PhJ	ENSLUMG00010051431	pseudogene	Chr7:18452638-18452955 (+)
SPRET/EiJ	ENSMSPG00010051283	pseudogene	Chr7:17811099-17811395 (+)
WSB/EiJ	ENSIUOG00005053605	pseudogene	Chr7:12683111-12683428 (+)

Homology

• Gene Tree
  Gm19880
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108925 (Evidence)
• NCBI Gene
  100503763

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108925	Ensembl Gene Model | MGI Sequence Detail	318	C57BL/6J
transcript	ENSMUST00000207731	Ensembl | MGI Sequence Detail	318	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;