Gm19872 Gene Detail

Summary

• Symbol
  Gm19872
• Name
  predicted gene, 19872

• Feature Type
  lncRNA gene
• IDs
  MGI:5012057
  NCBI Gene: 100503751
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:88187147-88190420 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 42.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012057	lncRNA gene	Chr8:88186433-88262001 (+)
129S1/SvImJ	ENSMUSG00200017505	lncRNA gene	Chr8:82539797-82543119 (+)
A/J	ENSMUSG00195029225	lncRNA gene	Chr8:82897100-82900492 (+)
AKR/J	ENSMUSG00220039375	lncRNA gene	Chr8:82938707-82942031 (+)
BALB/cJ	ENSMUSG00180027221	lncRNA gene	Chr8:82743326-82746650 (+)
C3H/HeJ	ENSMUSG00175026515	lncRNA gene	Chr8:82832595-82835983 (+)
C57BL/6NJ	ENSMUSG00215028853	lncRNA gene	Chr8:82453875-82457203 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006696	lincRNA gene	Chr8:79006060-79009370 (+)
CAST/EiJ	ENSTCUG00005017099	lncRNA gene	Chr8:82310047-82313429 (+)
CBA/J	ENSMUSG00210038174	lncRNA gene	Chr8:82818765-82822089 (+)
DBA/2J	ENSMUSG00185040763	lncRNA gene	Chr8:88927309-88930631 (+)
FVB/NJ	ENSMUSG00205017085	lncRNA gene	Chr8:81874556-81877878 (+)
JF1/MsJ	ENSUMUG00000044487	lncRNA gene	Chr8:91230665-91234059 (+)
LP/J	ENSMUSG00230031872	lncRNA gene	Chr8:92536644-92539966 (+)
NOD/ShiLtJ	ENSMUSG00190015965	lncRNA gene	Chr8:82908771-82912097 (+)
NZO/HlLtJ	ENSMUSG00225040564	lncRNA gene	Chr8:95944663-95947991 (+)
PWK/PhJ	ENSLUMG00010042262	lncRNA gene	Chr8:82549502-82552878 (+)
SPRET/EiJ	ENSMSPG00010029417	lncRNA gene	Chr8:84481842-84485311 (+)
WSB/EiJ	ENSIUOG00005020956	lncRNA gene	Chr8:83626846-83630211 (+)

Homology

• Gene Tree
  Gm19872
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  30 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm19872
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  106
• RefSeq
  1

• Ensembl
  ENSMUSG00000098295 (Evidence)
• NCBI Gene
  100503751

Representative Sequences			Length	Strain/Species
genomic	100503751	NCBI Gene Model | MGI Sequence Detail	3274	C57BL/6J
transcript	NR_166506	RefSeq | MGI Sequence Detail	632	ZRU/MplStud

References

• Summaries
  All 34

  Phenotypes 30
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm19872:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78594	Chr8:88187142-88187149 (+)	-1 bp