Gm19790 Pseudogene Detail

Summary

• Symbol
  Gm19790
• Name
  predicted gene, 19790

• Feature Type
  pseudogene
• IDs
  MGI:5011975
  NCBI Gene: 102637863
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:14591266-14591516 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 4.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011975	pseudogene	Chr9:14590247-14591570 (+)
129S1/SvImJ	ENSMUSG00200049882	pseudogene	Chr9:11493098-11493348 (+)
A/J	ENSMUSG00195041442	pseudogene	Chr9:11378644-11378881 (+)
AKR/J	ENSMUSG00220034029	pseudogene	Chr9:11356093-11356343 (+)
BALB/cJ	ENSMUSG00180043054	pseudogene	Chr9:11502538-11502788 (+)
C3H/HeJ	ENSMUSG00175046234	pseudogene	Chr9:11449585-11449835 (+)
C57BL/6NJ	ENSMUSG00215037642	pseudogene	Chr9:11444166-11444416 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035424	pseudogene	Chr9:11469011-11469261 (+)
CBA/J	ENSMUSG00210044262	pseudogene	Chr9:11480553-11480803 (+)
DBA/2J	ENSMUSG00185027726	pseudogene	Chr9:11569260-11569510 (+)
FVB/NJ	ENSMUSG00205042274	pseudogene	Chr9:11553260-11553510 (+)
JF1/MsJ	ENSUMUG00000046703	pseudogene	Chr9:11545835-11546076 (+)
LP/J	ENSMUSG00230044491	pseudogene	Chr9:11991227-11991477 (+)
NOD/ShiLtJ	ENSMUSG00190041731	pseudogene	Chr9:11479802-11480052 (+)
NZO/HlLtJ	ENSMUSG00225051839	pseudogene	Chr9:11880404-11880654 (+)
PWK/PhJ	ENSLUMG00010046731	pseudogene	Chr9:11475915-11476156 (+)
SPRET/EiJ	ENSMSPG00010026295	pseudogene	Chr9:11659596-11659846 (+)
WSB/EiJ	ENSIUOG00005045325	pseudogene	Chr9:11142879-11143129 (+)

Homology

• Gene Tree
  Gm19790
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111330 (Evidence)
• NCBI Gene
  102637863

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111330	Ensembl Gene Model | MGI Sequence Detail	251	C57BL/6J
transcript	ENSMUST00000214414	Ensembl | MGI Sequence Detail	251	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;