Gm19624 Pseudogene Detail

Summary

• Symbol
  Gm19624
• Name
  predicted gene, 19624

• Feature Type
  pseudogene
• IDs
  MGI:5011809
  NCBI Gene: 102639184
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:85665606-85669179 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011809	pseudogene	Chr10:85665459-85671856 (+)
129S1/SvImJ	ENSMUSG00200029993	pseudogene	Chr10:82159858-82163431 (+)
A/J	ENSMUSG00195023404	pseudogene	Chr10:82609750-82613323 (+)
AKR/J	ENSMUSG00220022020	pseudogene	Chr10:82212044-82215621 (+)
BALB/cJ	ENSMUSG00180034507	pseudogene	Chr10:82612865-82616440 (+)
C3H/HeJ	ENSMUSG00175022734	pseudogene	Chr10:82488728-82492301 (+)
C57BL/6NJ	ENSMUSG00215026218	pseudogene	Chr10:82157180-82160755 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210034609	pseudogene	Chr10:82339458-82343031 (+)
DBA/2J	ENSMUSG00185042778	pseudogene	Chr10:82553523-82557097 (+)
FVB/NJ	ENSMUSG00205020420	pseudogene	Chr10:82210181-82213752 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230018632	pseudogene	Chr10:84445962-84449540 (+)
NOD/ShiLtJ	ENSMUSG00190018550	pseudogene	Chr10:82595409-82598984 (+)
NZO/HlLtJ	ENSMUSG00225053815	pseudogene	Chr10:88718666-88722239 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010035991	pseudogene	Chr10:83638263-83641823 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm19624
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19624
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000112326 (Evidence)
• NCBI Gene
  102639184

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112326	Ensembl Gene Model | MGI Sequence Detail	3574	C57BL/6J
transcript	ENSMUST00000218949	Ensembl | MGI Sequence Detail	218	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm19624:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94933	Chr10:85665234-85665277 (+)	-350 bp
Tssr94934	Chr10:85665287-85665310 (+)	-307 bp