Gm19599 Pseudogene Detail

Summary

• Symbol
  Gm19599
• Name
  predicted gene, 19599

• Feature Type
  pseudogene
• IDs
  MGI:5011784
  NCBI Gene: 100503229
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:49545791-49546148 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 21.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011784	pseudogene	Chr12:49545649-49546330 (+)
129S1/SvImJ	ENSMUSG00200031103	pseudogene	Chr12:41484649-41485006 (+)
A/J	ENSMUSG00195018727	pseudogene	Chr12:44066130-44066487 (+)
AKR/J	ENSMUSG00220026703	pseudogene	Chr12:42084269-42084626 (+)
BALB/cJ	ENSMUSG00180006371	pseudogene	Chr12:43057994-43058351 (+)
C3H/HeJ	ENSMUSG00175011691	pseudogene	Chr12:46125222-46125579 (+)
C57BL/6NJ	ENSMUSG00215019473	pseudogene	Chr12:42492716-42493073 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009100	pseudogene	Chr12:42666655-42667012 (+)
CBA/J	ENSMUSG00210009795	pseudogene	Chr12:42592784-42593141 (+)
DBA/2J	ENSMUSG00185015152	pseudogene	Chr12:44583738-44584095 (+)
FVB/NJ	ENSMUSG00205014176	pseudogene	Chr12:42401627-42401984 (+)
JF1/MsJ	ENSUMUG00000003188	pseudogene	Chr12:48706849-48707206 (+)
LP/J	ENSMUSG00230016725	pseudogene	Chr12:51608445-51608802 (+)
NOD/ShiLtJ	ENSMUSG00190016664	pseudogene	Chr12:41602641-41602998 (+)
NZO/HlLtJ	ENSMUSG00225041200	pseudogene	Chr12:53752979-53753336 (+)
PWK/PhJ	ENSLUMG00010017009	pseudogene	Chr12:42815453-42815810 (+)
SPRET/EiJ	ENSMSPG00010016180	pseudogene	Chr12:44065947-44066304 (+)
WSB/EiJ	ENSIUOG00005003593	pseudogene	Chr12:42428632-42428989 (+)

Homology

• Gene Tree
  Gm19599
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112079 (Evidence)
• NCBI Gene
  100503229

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112079	Ensembl Gene Model | MGI Sequence Detail	358	C57BL/6J
transcript	ENSMUST00000218898	Ensembl | MGI Sequence Detail	358	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;