Gm19589 Gene Detail

Summary

• Symbol
  Gm19589
• Name
  predicted gene, 19589

• Feature Type
  lncRNA gene
• IDs
  MGI:5011774
  NCBI Gene: 100503197
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:88479239-88489888 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  457 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011774	lncRNA gene	Chr1:88432634-88489889 (+)
129S1/SvImJ	ENSMUSG00200038793	lncRNA gene	Chr1:85723504-85734088 (+)
A/J	ENSMUSG00195033680	lncRNA gene	Chr1:85284336-85294920 (+)
AKR/J	ENSMUSG00220045555	lncRNA gene	Chr1:85432237-85442821 (+)
BALB/cJ	ENSMUSG00180016920	lncRNA gene	Chr1:85568966-85579616 (+)
C3H/HeJ	ENSMUSG00175001636	lncRNA gene	Chr1:85447576-85458226 (+)
C57BL/6NJ	ENSMUSG00215032810	lncRNA gene	Chr1:85378303-85388947 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004437	lincRNA gene	Chr1:81044024-81054550 (+)
CAST/EiJ	ENSTCUG00005007534	lncRNA gene	Chr1:85031357-85041946 (+)
CBA/J	ENSMUSG00210012559	lncRNA gene	Chr1:85292882-85303532 (+)
DBA/2J	ENSMUSG00185016874	lncRNA gene	Chr1:89768543-89779121 (+)
FVB/NJ	ENSMUSG00205043573	lncRNA gene	Chr1:84717999-84728579 (+)
JF1/MsJ	ENSUMUG00000024448	lncRNA gene	Chr1:88533485-88543998 (+)
LP/J	ENSMUSG00230020622	lncRNA gene	Chr1:89059804-89070388 (+)
NOD/ShiLtJ	ENSMUSG00190035862	lncRNA gene	Chr1:85358835-85369431 (+)
NZO/HlLtJ	ENSMUSG00225004017	lncRNA gene	Chr1:92955980-92966558 (+)
PWK/PhJ	ENSLUMG00010049006	lncRNA gene	Chr1:84926985-84937600 (+)
SPRET/EiJ	ENSMSPG00010047194	lncRNA gene	Chr1:86950374-86960847 (+)
WSB/EiJ	ENSIUOG00005043035	lncRNA gene	Chr1:84980725-84991387 (+)

Homology

• Gene Tree
  Gm19589
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm19589
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000100798 (Evidence)
• NCBI Gene
  100503197

Representative Sequences			Length	Strain/Species
genomic	100503197	NCBI Gene Model | MGI Sequence Detail	10650	C57BL/6J
transcript	NR_037971	RefSeq | MGI Sequence Detail	2622	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm19589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7974	Chr1:88479247-88479269 (+)	19 bp
Tssr7975	Chr1:88487623-88487645 (+)	8,395 bp