Gm19554 Gene Detail

Summary

• Symbol
  Gm19554
• Name
  predicted gene, 19554

• Feature Type
  lncRNA gene
• IDs
  MGI:5011739
  NCBI Gene: 100503099
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:105865675-105868692 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 56.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011739	lncRNA gene	Chr12:105830073-105868692 (+)
129S1/SvImJ	ENSMUSG00200029172	lncRNA gene	Chr12:97636374-97638996 (+)
A/J	ENSMUSG00195022438	lncRNA gene	Chr12:100198435-100201058 (+)
AKR/J	ENSMUSG00220042969	lncRNA gene	Chr12:98075918-98078540 (+)
BALB/cJ	ENSMUSG00180038171	lncRNA gene	Chr12:99396120-99398799 (+)
C3H/HeJ	ENSMUSG00175035127	lncRNA gene	Chr12:102015761-102018383 (+)
C57BL/6NJ	ENSMUSG00215041547	lncRNA gene	Chr12:98672317-98674939 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019501	lncRNA gene	Chr12:98121029-98123670 (+)
CBA/J	ENSMUSG00210015174	lncRNA gene	Chr12:99077781-99080403 (+)
DBA/2J	ENSMUSG00185029510	lncRNA gene	Chr12:100843423-100846045 (+)
FVB/NJ	ENSMUSG00205021057	lncRNA gene	Chr12:98081577-98084256 (+)
JF1/MsJ	ENSUMUG00000029433	lncRNA gene	Chr12:105608870-105611556 (+)
LP/J	ENSMUSG00230032907	lncRNA gene	Chr12:107901649-107904271 (+)
NOD/ShiLtJ	ENSMUSG00190026880	lncRNA gene	Chr12:87134937-87137559 (-)
NZO/HlLtJ	ENSMUSG00225038902	lncRNA gene	Chr12:109651149-109653828 (+)
PWK/PhJ	ENSLUMG00010013854	lncRNA gene	Chr12:99080324-99082978 (+)
SPRET/EiJ	ENSMSPG00010020893	lncRNA gene	Chr12:101374932-101377753 (+)
WSB/EiJ	ENSIUOG00005009793	lncRNA gene	Chr12:98086118-98088799 (+)

Homology

• Gene Tree
  Gm19554
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19554
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000113835 (Evidence)
• NCBI Gene
  100503099

Representative Sequences			Length	Strain/Species
genomic	100503099	NCBI Gene Model | MGI Sequence Detail	3018	C57BL/6J
transcript	NR_166752	RefSeq | MGI Sequence Detail	2685	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm19554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114927	Chr12:105866115-105866125 (+)	445 bp