Gm19541 Gene Detail

Summary

• Symbol
  Gm19541
• Name
  predicted gene, 19541

• Feature Type
  lncRNA gene
• IDs
  MGI:5011726
  NCBI Gene: 100503078
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:76953964-76959235 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 42.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011726	lncRNA gene	Chr9:76953964-76959235 (+)
129S1/SvImJ	ENSMUSG00200019364	lncRNA gene	Chr9:74063931-74069204 (+)
A/J	ENSMUSG00195011257	lncRNA gene	Chr9:73848010-73853285 (+)
AKR/J	ENSMUSG00220015430	lncRNA gene	Chr9:73982681-73987956 (+)
BALB/cJ	ENSMUSG00180020950	lncRNA gene	Chr9:73961542-73966815 (+)
C3H/HeJ	ENSMUSG00175011729	lncRNA gene	Chr9:73994060-73999337 (+)
C57BL/6NJ	ENSMUSG00215018794	lncRNA gene	Chr9:73912739-73918010 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006794	lincRNA gene	Chr9:74034707-74039972 (+)
CAST/EiJ	ENSTCUG00005009682	lncRNA gene	Chr9:73660219-73665495 (+)
CBA/J	ENSMUSG00210013386	lncRNA gene	Chr9:74047029-74052304 (+)
DBA/2J	ENSMUSG00185007607	lncRNA gene	Chr9:74082311-74087586 (+)
FVB/NJ	ENSMUSG00205031412	lncRNA gene	Chr9:74351469-74356744 (+)
JF1/MsJ	ENSUMUG00000039509	lncRNA gene	Chr9:74048969-74054253 (+)
LP/J	ENSMUSG00230025370	lncRNA gene	Chr9:74238586-74243859 (+)
NOD/ShiLtJ	ENSMUSG00190037618	lncRNA gene	Chr9:74184208-74189483 (+)
NZO/HlLtJ	ENSMUSG00225026095	lncRNA gene	Chr9:74379743-74385018 (+)
PWK/PhJ	ENSLUMG00010016101	lncRNA gene	Chr9:73986754-73992025 (+)
SPRET/EiJ	ENSMSPG00010004216	lncRNA gene	Chr9:75201745-75207010 (+)
WSB/EiJ	ENSIUOG00005027479	lncRNA gene	Chr9:73520616-73525891 (+)

Homology

• Gene Tree
  Gm19541
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm19541
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000098370 (Evidence)
• NCBI Gene
  100503078

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098370	Ensembl Gene Model | MGI Sequence Detail	5272	C57BL/6J
transcript	ENSMUST00000184488	Ensembl | MGI Sequence Detail	2868	Not Applicable

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm19541:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86192	Chr9:76953962-76953977 (+)	6 bp