Gm19541 Gene Detail

Summary

• Symbol
  Gm19541
• Name
  predicted gene, 19541

• Feature Type
  lncRNA gene
• IDs
  MGI:5011726
  NCBI Gene: 100503078
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:76953964-76959235 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 42.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011726	lncRNA gene	Chr9:76953964-76959235 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007461	lincRNA gene	Chr9:77455080-77460353 (+)
A/J	MGP_AJ_G0007456	lincRNA gene	Chr9:74750190-74755465 (+)
AKR/J	MGP_AKRJ_G0007429	lincRNA gene	Chr9:76527944-76533215 (+)
BALB/cJ	MGP_BALBcJ_G0007434	lincRNA gene	Chr9:74431650-74436925 (+)
C3H/HeJ	MGP_C3HHeJ_G0007378	lincRNA gene	Chr9:77027944-77033217 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007606	lincRNA gene	Chr9:79518134-79523405 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006794	lincRNA gene	Chr9:74034707-74039972 (+)
CAST/EiJ	MGP_CASTEiJ_G0007282	lincRNA gene	Chr9:77380743-77386017 (+)
CBA/J	MGP_CBAJ_G0007360	lincRNA gene	Chr9:82270251-82275512 (+)
DBA/2J	MGP_DBA2J_G0007384	lincRNA gene	Chr9:74413233-74418508 (+)
FVB/NJ	MGP_FVBNJ_G0007402	lincRNA gene	Chr9:73682128-73687403 (+)
LP/J	MGP_LPJ_G0007466	lincRNA gene	Chr9:77685210-77690483 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007382	lincRNA gene	Chr9:83471763-83477022 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007609	lincRNA gene	Chr9:76699554-76704829 (+)
PWK/PhJ	MGP_PWKPhJ_G0007222	lincRNA gene	Chr9:74672883-74678154 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007127	lincRNA gene	Chr9:76956912-76962177 (+)
WSB/EiJ	MGP_WSBEiJ_G0007342	lincRNA gene	Chr9:76620884-76626153 (+)

Homology

• Gene Tree
  Gm19541
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm19541
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098370 (Evidence)
• NCBI Gene
  100503078

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098370	Ensembl Gene Model | MGI Sequence Detail	5272	C57BL/6J
transcript	ENSMUST00000184488	Ensembl | MGI Sequence Detail	2868	Not Applicable

References

• Summaries
  All 10

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm19541:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86192	Chr9:76953962-76953977 (+)	6 bp