Gm19540 Pseudogene Detail

Summary

• Symbol
  Gm19540
• Name
  predicted gene, 19540

• Feature Type
  pseudogene
• IDs
  MGI:5011725
  NCBI Gene: 100503077
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88555386-88557207 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 42.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011725	pseudogene	Chr12:88555382-88558702 (-)
129S1/SvImJ	ENSMUSG00200051019	pseudogene	Chr12:80318139-80319952 (-)
A/J	ENSMUSG00195035270	pseudogene	Chr12:82977553-82979366 (-)
AKR/J	ENSMUSG00220049755	pseudogene	Chr12:80634557-80636370 (-)
BALB/cJ	ENSMUSG00180016447	pseudogene	Chr12:82126920-82128741 (-)
C3H/HeJ	ENSMUSG00175039275	pseudogene	Chr12:84745437-84747250 (-)
C57BL/6NJ	ENSMUSG00215019012	pseudogene	Chr12:81324214-81326035 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032935	pseudogene	Chr12:81189284-81191136 (-)
CBA/J	ENSMUSG00210019069	pseudogene	Chr12:81721038-81722851 (-)
DBA/2J	ENSMUSG00185003029	pseudogene	Chr12:83572887-83574700 (-)
FVB/NJ	ENSMUSG00205044191	pseudogene	Chr12:80935488-80937309 (-)
JF1/MsJ	ENSUMUG00000052245	pseudogene	Chr12:88245365-88247241 (-)
LP/J	ENSMUSG00230047520	pseudogene	Chr12:90634956-90636769 (-)
NOD/ShiLtJ	ENSMUSG00190039923	pseudogene	Chr12:104411127-104412941 (+)
NZO/HlLtJ	ENSMUSG00225053118	pseudogene	Chr12:92419821-92421642 (-)
PWK/PhJ	ENSLUMG00010003489	pseudogene	Chr12:81734382-81736223 (-)
SPRET/EiJ	ENSMSPG00010001134	pseudogene	Chr12:84076902-84078818 (-)
WSB/EiJ	ENSIUOG00005047039	pseudogene	Chr12:80953445-80955271 (-)

Homology

• Gene Tree
  Gm19540
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19540
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113213 (Evidence)
• NCBI Gene
  100503077

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113213	Ensembl Gene Model | MGI Sequence Detail	1822	C57BL/6J
transcript	ENSMUST00000221843	Ensembl | MGI Sequence Detail	810	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;