Gm19500 Gene Detail

Summary

• Symbol
  Gm19500
• Name
  predicted gene, 19500

• Feature Type
  lncRNA gene
• IDs
  MGI:5011685
  NCBI Gene: 100503007
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr18:57538487-57549222 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 32.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  439 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011685	lncRNA gene	Chr18:57538388-57563084 (+)
129S1/SvImJ	ENSMUSG00200034859	lncRNA gene	Chr18:54632701-54643507 (+)
A/J	ENSMUSG00195005617	lncRNA gene	Chr18:54755716-54766534 (+)
AKR/J	ENSMUSG00220016397	lncRNA gene	Chr18:54748493-54759305 (+)
BALB/cJ	ENSMUSG00180012792	lncRNA gene	Chr18:55326651-55337463 (+)
C3H/HeJ	ENSMUSG00175037836	lncRNA gene	Chr18:54942757-54953563 (+)
C57BL/6NJ	ENSMUSG00215040517	lncRNA gene	Chr18:54267013-54277826 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027772	lncRNA gene	Chr18:54144040-54154739 (+)
CBA/J	ENSMUSG00210033663	lncRNA gene	Chr18:54891643-54902458 (+)
DBA/2J	ENSMUSG00185015890	lncRNA gene	Chr18:54794906-54805713 (+)
FVB/NJ	ENSMUSG00205019831	lncRNA gene	Chr18:54258805-54269609 (+)
JF1/MsJ	ENSUMUG00000039269	lncRNA gene	Chr18:54692729-54703475 (+)
LP/J	ENSMUSG00230011536	lncRNA gene	Chr18:56805415-56816218 (+)
NOD/ShiLtJ	ENSMUSG00190034256	lncRNA gene	Chr18:54525881-54536684 (+)
NZO/HlLtJ	ENSMUSG00225035357	lncRNA gene	Chr18:56669401-56680207 (+)
PWK/PhJ	ENSLUMG00010008689	lncRNA gene	Chr18:54824039-54834780 (+)
SPRET/EiJ	ENSMSPG00010019574	lncRNA gene	Chr18:55210029-55221548 (+)
WSB/EiJ	ENSIUOG00005009441	lncRNA gene	Chr18:54430408-54441222 (+)

Homology

• Gene Tree
  Gm19500
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm19500
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000117864 (Evidence)
• NCBI Gene
  100503007

Representative Sequences			Length	Strain/Species
genomic	100503007	NCBI Gene Model | MGI Sequence Detail	10736	C57BL/6J
transcript	NR_152223	RefSeq | MGI Sequence Detail	2682	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm19500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5329	Chr18:57538370-57538398 (+)	-103 bp
Tssr151197	Chr18:57538403-57538430 (+)	-70 bp
Tssr151198	Chr18:57538469-57538504 (+)	0 bp