Gm19497 Gene Detail

Summary

• Symbol
  Gm19497
• Name
  predicted gene, 19497

• Feature Type
  lncRNA gene
• IDs
  MGI:5011682
  NCBI Gene: 105246710
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:133987778-133988685 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 58.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011682	lncRNA gene	Chr1:133987012-133994681 (-)
129S1/SvImJ	ENSMUSG00200009174	lncRNA gene	Chr1:131590789-131592120 (-)
A/J	ENSMUSG00195044411	lncRNA gene	Chr1:130666034-130667365 (-)
AKR/J	ENSMUSG00220050204	lncRNA gene	Chr1:130535459-130536790 (-)
BALB/cJ	ENSMUSG00180039244	lncRNA gene	Chr1:131214151-131215482 (-)
C3H/HeJ	ENSMUSG00175046712	lncRNA gene	Chr1:130910327-130911658 (-)
C57BL/6NJ	ENSMUSG00215045668	lncRNA gene	Chr1:130915807-130917138 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038978	lncRNA gene	Chr1:129828216-129829552 (-)
CBA/J	ENSMUSG00210028479	lncRNA gene	Chr1:130830875-130832206 (-)
DBA/2J	ENSMUSG00185034783	lncRNA gene	Chr1:135202233-135203564 (-)
FVB/NJ	ENSMUSG00205044205	lncRNA gene	Chr1:130167497-130168828 (-)
JF1/MsJ	ENSUMUG00000052978	lncRNA gene	Chr1:134351317-134352648 (-)
LP/J	ENSMUSG00230039383	lncRNA gene	Chr1:134749050-134750381 (-)
NOD/ShiLtJ	ENSMUSG00190047915	lncRNA gene	Chr1:130845043-130846374 (-)
NZO/HlLtJ	ENSMUSG00225021740	lncRNA gene	Chr1:138502309-138503640 (-)
PWK/PhJ	ENSLUMG00010028522	lncRNA gene	Chr1:129981676-129983005 (-)
SPRET/EiJ	ENSMSPG00010045178	lncRNA gene	Chr1:132780724-132782055 (-)
WSB/EiJ	ENSIUOG00005048089	lncRNA gene	Chr1:130584523-130585854 (-)

Homology

• Gene Tree
  Gm19497
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm19497
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000120043 (Evidence)
• NCBI Gene
  105246710

Representative Sequences			Length	Strain/Species
genomic	105246710	NCBI Gene Model | MGI Sequence Detail	908	C57BL/6J
transcript	NR_165647	RefSeq | MGI Sequence Detail	569	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm19497:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13765	Chr1:133988648-133988697 (-)	12 bp
Tssr13764	Chr1:133988600-133988611 (-)	79 bp
Tssr13763	Chr1:133988549-133988553 (-)	134 bp