Gm19439 Gene Detail

Summary

• Symbol
  Gm19439
• Name
  predicted gene, 19439
• Synonyms
  Gm42644

• Feature Type
  lncRNA gene
• IDs
  MGI:5011624
  NCBI Gene: 105244487
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:87938176-87940464 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011624	lncRNA gene	Chr3:87938165-87940464 (+)
129S1/SvImJ	ENSMUSG00200040527	unclassified gene	Chr3:84793020-84795308 (+)
A/J	ENSMUSG00195053272	unclassified gene	Chr3:84816805-84819088 (+)
AKR/J	ENSMUSG00220051323	unclassified gene	Chr3:84762792-84765080 (+)
BALB/cJ	ENSMUSG00180049801	unclassified gene	Chr3:84932413-84934701 (+)
C3H/HeJ	ENSMUSG00175048565	unclassified gene	Chr3:84744526-84746809 (+)
C57BL/6NJ	ENSMUSG00215050286	unclassified gene	Chr3:85180737-85183025 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001000	unclassified gene	Chr3:80806994-80809274 (+)
CAST/EiJ	ENSTCUG00005048114	unclassified gene	Chr3:84271646-84273927 (+)
CBA/J	ENSMUSG00210049055	unclassified gene	Chr3:84887529-84889812 (+)
DBA/2J	ENSMUSG00185053352	unclassified gene	Chr3:85021088-85023376 (+)
FVB/NJ	ENSMUSG00205051048	unclassified gene	Chr3:83811764-83814047 (+)
JF1/MsJ	ENSUMUG00000051291	unclassified gene	Chr3:84558762-84561042 (+)
LP/J	ENSMUSG00230037225	unclassified gene	Chr3:87014437-87016725 (+)
NOD/ShiLtJ	ENSMUSG00190051045	unclassified gene	Chr3:85263978-85266261 (+)
NZO/HlLtJ	ENSMUSG00225008200	unclassified gene	Chr3:89769766-89772054 (+)
PWK/PhJ	ENSLUMG00010052078	unclassified gene	Chr3:84651630-84653913 (+)
SPRET/EiJ	ENSMSPG00010050161	unclassified gene	Chr3:85489355-85491645 (+)
WSB/EiJ	ENSIUOG00005050913	unclassified gene	Chr3:85264497-85266780 (+)

Homology

• Gene Tree
  Gm19439
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19439
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105843 (Evidence)
• NCBI Gene
  105244487

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105843	Ensembl Gene Model | MGI Sequence Detail	2289	C57BL/6J
transcript	NR_166128	RefSeq | MGI Sequence Detail	1063	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662781

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm19439:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29887	Chr3:87938146-87938157 (+)	-24 bp
Tssr29888	Chr3:87938159-87938170 (+)	-11 bp
Tssr29889	Chr3:87938179-87938192 (+)	10 bp