Gm19409 Gene Detail

Summary

• Symbol
  Gm19409
• Name
  predicted gene, 19409

• Feature Type
  lncRNA gene
• IDs
  MGI:5011594
  NCBI Gene: 100502845
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:30972964-30975821 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 16.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011594	lncRNA gene	Chr5:30972964-30975821 (+)
129S1/SvImJ	ENSMUSG00200014444	lncRNA gene	Chr5:26475133-26478003 (+)
A/J	ENSMUSG00195050341	lncRNA gene	Chr5:25921289-25924146 (+)
AKR/J	ENSMUSG00220009312	lncRNA gene	Chr5:25936317-25939187 (+)
BALB/cJ	ENSMUSG00180038075	lncRNA gene	Chr5:25725871-25728728 (+)
C3H/HeJ	ENSMUSG00175049330	lncRNA gene	Chr5:27700218-27703075 (+)
C57BL/6NJ	ENSMUSG00215040706	lncRNA gene	Chr5:26435874-26438732 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034572	sense intronic lncRNA gene	Chr5:25317359-25320228 (+)
CAST/EiJ	ENSTCUG00005026153	lncRNA gene	Chr5:25901454-25904343 (+)
CBA/J	ENSMUSG00210049119	lncRNA gene	Chr5:26673381-26676238 (+)
DBA/2J	ENSMUSG00185038504	lncRNA gene	Chr5:28527130-28529987 (+)
FVB/NJ	ENSMUSG00205044074	lncRNA gene	Chr5:25424795-25427652 (+)
JF1/MsJ	ENSUMUG00000055083	lncRNA gene	Chr5:33067380-33070261 (+)
LP/J	ENSMUSG00230048411	lncRNA gene	Chr5:33145571-33148441 (+)
NOD/ShiLtJ	ENSMUSG00190015935	lncRNA gene	Chr5:25724191-25727048 (+)
NZO/HlLtJ	ENSMUSG00225021670	lncRNA gene	Chr5:38351674-38354531 (+)
PWK/PhJ	ENSLUMG00010049705	lncRNA gene	Chr5:25817963-25820811 (+)
SPRET/EiJ	ENSMSPG00010044316	lncRNA gene	Chr5:26985405-26988259 (+)
WSB/EiJ	ENSIUOG00005044301	lncRNA gene	Chr5:28617190-28620059 (+)

Homology

• Gene Tree
  Gm19409
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm19409
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000106229 (Evidence)
• NCBI Gene
  100502845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106229	Ensembl Gene Model | MGI Sequence Detail	2858	C57BL/6J
transcript	ENSMUST00000198244	Ensembl | MGI Sequence Detail	2858	Not Applicable
polypeptide	Q3UVF0	UniProt | EBI | MGI Sequence Detail	100	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105