Gm19340 Pseudogene Detail

Summary

• Symbol
  Gm19340
• Name
  predicted gene, 19340

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5011525
  NCBI Gene: 100502727
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:25332594-25332938 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 9.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011525	pseudogene	Chr12:25332386-25332938 (+)
129S1/SvImJ	ENSMUSG00200024269	pseudogene	Chr12:17083035-17083379 (+)
A/J	ENSMUSG00195019843	pseudogene	Chr12:19814962-19815306 (+)
AKR/J	ENSMUSG00220027580	pseudogene	Chr12:17759740-17760084 (+)
BALB/cJ	ENSMUSG00180010770	pseudogene	Chr12:18757615-18757959 (+)
C3H/HeJ	ENSMUSG00175022920	pseudogene	Chr12:21808485-21808829 (+)
C57BL/6NJ	ENSMUSG00215005835	pseudogene	Chr12:18227948-18228292 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006374	pseudogene	Chr12:18620665-18621009 (+)
CBA/J	ENSMUSG00210007796	pseudogene	Chr12:18294667-18295011 (+)
DBA/2J	ENSMUSG00185015188	pseudogene	Chr12:20321955-20322299 (+)
FVB/NJ	ENSMUSG00205001772	pseudogene	Chr12:18393957-18394301 (+)
JF1/MsJ	ENSUMUG00000006168	pseudogene	Chr12:24535325-24535669 (+)
LP/J	ENSMUSG00230007632	pseudogene	Chr12:27293284-27293628 (+)
NOD/ShiLtJ	ENSMUSG00190014558	pseudogene	Chr12:17264564-17264908 (+)
NZO/HlLtJ	ENSMUSG00225034990	pseudogene	Chr12:29476401-29476745 (+)
PWK/PhJ	ENSLUMG00010004777	pseudogene	Chr12:18809105-18809449 (+)
SPRET/EiJ	ENSMSPG00010003245	pseudogene	Chr12:19086311-19086655 (+)
WSB/EiJ	ENSIUOG00005001735	pseudogene	Chr12:17959956-17960300 (+)

Homology

• Gene Tree
  Gm19340
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000113745 (Evidence)
• NCBI Gene
  100502727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113745	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000221995	Ensembl | MGI Sequence Detail	345	Not Applicable
polypeptide	XP_036013680	RefSeq | MGI Sequence Detail	113	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;