Gm19197 Pseudogene Detail

Summary

• Symbol
  Gm19197
• Name
  predicted gene, 19197

• Feature Type
  pseudogene
• IDs
  MGI:5011382
  NCBI Gene: 100418416
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:52315995-52316597 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 27.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011382	pseudogene	Chr17:52315995-52316597 (+)
129S1/SvImJ	ENSMUSG00200028832	pseudogene	Chr17:47553063-47553665 (+)
A/J	ENSMUSG00195022411	pseudogene	Chr17:49014803-49015405 (+)
AKR/J	ENSMUSG00220038455	pseudogene	Chr17:48014792-48015394 (+)
BALB/cJ	ENSMUSG00180025921	pseudogene	Chr17:48771029-48771631 (+)
C3H/HeJ	ENSMUSG00175016850	pseudogene	Chr17:48078339-48078941 (+)
C57BL/6NJ	ENSMUSG00215033815	pseudogene	Chr17:47647255-47647857 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025978	pseudogene	Chr17:48853032-48853634 (+)
CBA/J	ENSMUSG00210040456	pseudogene	Chr17:47827880-47828482 (+)
DBA/2J	ENSMUSG00185009227	pseudogene	Chr17:50727017-50727619 (+)
FVB/NJ	ENSMUSG00205053395	pseudogene	Chr17:48308454-48309056 (+)
JF1/MsJ	ENSUMUG00000036974	pseudogene	Chr17:50475084-50475686 (+)
LP/J	ENSMUSG00230029566	pseudogene	Chr17:51664454-51665056 (+)
NOD/ShiLtJ	ENSMUSG00190018144	pseudogene	Chr17:47803794-47804396 (+)
NZO/HlLtJ	ENSMUSG00225043635	pseudogene	Chr17:53885859-53886461 (+)
PWK/PhJ	ENSLUMG00010036668	pseudogene	Chr17:47666485-47667087 (+)
SPRET/EiJ	ENSMSPG00010039835	pseudogene	Chr17:47890240-47890840 (+)
WSB/EiJ	ENSIUOG00005028061	pseudogene	Chr17:48711953-48712555 (+)

Homology

• Gene Tree
  Gm19197
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117170 (Evidence)
• NCBI Gene
  100418416

Representative Sequences			Length	Strain/Species
genomic	100418416	NCBI Gene Model | MGI Sequence Detail	603	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;