Gm19169 Pseudogene Detail

Summary

• Symbol
  Gm19169
• Name
  predicted gene, 19169

• Feature Type
  pseudogene
• IDs
  MGI:5011354
  NCBI Gene: 100418378
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:123419479-123420719 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 72.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011354	pseudogene	Chr10:123419479-123420738 (+)
129S1/SvImJ	ENSMUSG00200026970	pseudogene	Chr10:119764271-119765516 (+)
A/J	ENSMUSG00195022816	pseudogene	Chr10:120214614-120215853 (+)
AKR/J	ENSMUSG00220015066	pseudogene	Chr10:119837083-119838321 (+)
BALB/cJ	ENSMUSG00180017470	pseudogene	Chr10:120205980-120207219 (+)
C3H/HeJ	ENSMUSG00175025763	pseudogene	Chr10:120210415-120211653 (+)
C57BL/6NJ	ENSMUSG00215021075	pseudogene	Chr10:119834030-119835275 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210021489	pseudogene	Chr10:120045901-120047139 (+)
DBA/2J	ENSMUSG00185009104	pseudogene	Chr10:120155759-120156997 (+)
FVB/NJ	ENSMUSG00205028994	pseudogene	Chr10:119461255-119462493 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230034717	pseudogene	Chr10:122081659-122082898 (+)
NOD/ShiLtJ	ENSMUSG00190019104	pseudogene	Chr10:120258839-120260078 (+)
NZO/HlLtJ	ENSMUSG00225037836	pseudogene	Chr10:126323762-126325007 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010016840	pseudogene	Chr10:121790093-121791401 (+)
WSB/EiJ	ENSIUOG00005013904	pseudogene	Chr10:119853607-119854830 (+)

Homology

• Gene Tree
  Gm19169
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000111945 (Evidence)
• NCBI Gene
  100418378

Representative Sequences			Length	Strain/Species
genomic	100418378	NCBI Gene Model | MGI Sequence Detail	1241	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm19169:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3390	Chr10:123418465-123418468 (+)	-1,012 bp