Gm19094 Pseudogene Detail

Summary

• Symbol
  Gm19094
• Name
  predicted gene, 19094

• Feature Type
  pseudogene
• IDs
  MGI:5011279
  NCBI Gene: 100418241
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:141777258-141778500 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 87.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011279	pseudogene	Chr7:141777258-141778503 (+)
129S1/SvImJ	ENSMUSG00200046936	pseudogene	Chr7:128343133-128344382 (+)
A/J	ENSMUSG00195040936	pseudogene	Chr7:132825171-132826419 (+)
AKR/J	ENSMUSG00220037146	pseudogene	Chr7:126307381-126308632 (+)
BALB/cJ	ENSMUSG00180041666	pseudogene	Chr7:129511537-129512781 (+)
C3H/HeJ	ENSMUSG00175042741	pseudogene	Chr7:130246091-130247337 (+)
C57BL/6NJ	ENSMUSG00215047812	pseudogene	Chr7:129512453-129513700 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051653	pseudogene	Chr7:132801126-132802379 (+)
CBA/J	ENSMUSG00210032254	pseudogene	Chr7:130004033-130005282 (+)
DBA/2J	ENSMUSG00185017941	pseudogene	Chr7:134282614-134283862 (+)
FVB/NJ	ENSMUSG00205045820	pseudogene	Chr7:129924738-129925984 (+)
JF1/MsJ	ENSUMUG00000049381	pseudogene	Chr7:139352462-139353710 (+)
LP/J	ENSMUSG00230043069	pseudogene	Chr7:140445972-140447221 (+)
NOD/ShiLtJ	ENSMUSG00190031319	pseudogene	Chr7:130111509-130112756 (+)
NZO/HlLtJ	ENSMUSG00225052728	pseudogene	Chr7:138654892-138656140 (+)
PWK/PhJ	ENSLUMG00010047290	pseudogene	Chr7:128483086-128484333 (+)
SPRET/EiJ	ENSMSPG00010045292	pseudogene	Chr7:129939144-129940385 (+)
WSB/EiJ	ENSIUOG00005038636	pseudogene	Chr7:130845038-130846287 (+)

Homology

• Gene Tree
  Gm19094
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109581 (Evidence)
• NCBI Gene
  100418241

Representative Sequences			Length	Strain/Species
genomic	100418241	NCBI Gene Model | MGI Sequence Detail	1243	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm19094:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70123	Chr7:141775895-141775900 (+)	-1,360 bp