Gm19012 Pseudogene Detail

Summary

• Symbol
  Gm19012
• Name
  predicted gene, 19012

• Feature Type
  pseudogene
• IDs
  MGI:5011197
  NCBI Gene: 100418119
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:22713603-22714543 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011197	pseudogene	Chr17:22713600-22714543 (+)
129S1/SvImJ	ENSMUSG00200039010	pseudogene	Chr17:18271923-18272863 (+)
A/J	ENSMUSG00195038581	pseudogene	Chr17:19136287-19137227 (+)
AKR/J	ENSMUSG00220027064	pseudogene	Chr17:18335743-18336668 (+)
BALB/cJ	ENSMUSG00180017667	pseudogene	Chr17:18426515-18427455 (+)
C3H/HeJ	ENSMUSG00175043359	pseudogene	Chr17:18220960-18221885 (+)
C57BL/6NJ	ENSMUSG00215043209	pseudogene	Chr17:18206318-18207258 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023294	pseudogene	Chr17:18750190-18750618 (+)
CBA/J	ENSMUSG00210044915	pseudogene	Chr17:17987919-17988844 (+)
DBA/2J	ENSMUSG00185054910	pseudogene	Chr17:20232704-20233644 (+)
FVB/NJ	ENSMUSG00205037706	pseudogene	Chr17:18701903-18702828 (+)
JF1/MsJ	ENSUMUG00000041223	pseudogene	Chr17:19379421-19380297 (+)
LP/J	ENSMUSG00230055140	pseudogene	Chr17:21630623-21631563 (+)
NOD/ShiLtJ	ENSMUSG00190044366	pseudogene	Chr17:18196474-18197414 (+)
NZO/HlLtJ	ENSMUSG00225054814	pseudogene	Chr17:23553676-23554616 (+)
PWK/PhJ	ENSLUMG00010020909	pseudogene	Chr17:17650003-17650431 (+)
SPRET/EiJ	ENSMSPG00010042075	pseudogene	Chr17:19066429-19067369 (+)
WSB/EiJ	ENSIUOG00005040924	pseudogene	Chr17:19000719-19001659 (+)

Homology

• Gene Tree
  Gm19012
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm19012
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117259 (Evidence)
• NCBI Gene
  100418119

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117259	Ensembl Gene Model | MGI Sequence Detail	941	C57BL/6J
transcript	ENSMUST00000232727	Ensembl | MGI Sequence Detail	787	Not Applicable

References

• Summaries
  All 19

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964