Gm19007 Pseudogene Detail

Summary

• Symbol
  Gm19007
• Name
  predicted gene, 19007

• Feature Type
  pseudogene
• IDs
  MGI:5011192
  NCBI Gene: 100418113
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:106785158-106786031 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 55.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011192	pseudogene	Chr10:106785156-106786031 (+)
129S1/SvImJ	ENSMUSG00200011645	pseudogene	Chr10:103206102-103206963 (+)
A/J	ENSMUSG00195009155	pseudogene	Chr10:103613988-103614849 (+)
AKR/J	ENSMUSG00220024961	pseudogene	Chr10:103180139-103181008 (+)
BALB/cJ	ENSMUSG00180024123	pseudogene	Chr10:103620706-103621567 (+)
C3H/HeJ	ENSMUSG00175016455	pseudogene	Chr10:103563209-103564070 (+)
C57BL/6NJ	ENSMUSG00215011554	pseudogene	Chr10:103283640-103284513 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011726	pseudogene	Chr10:102700984-102701867 (+)
CBA/J	ENSMUSG00210011682	pseudogene	Chr10:103440964-103441825 (+)
DBA/2J	ENSMUSG00185025247	pseudogene	Chr10:103562978-103563839 (+)
FVB/NJ	ENSMUSG00205010860	pseudogene	Chr10:103059794-103060667 (+)
JF1/MsJ	ENSUMUG00000010937	pseudogene	Chr10:104972869-104973745 (+)
LP/J	ENSMUSG00230013109	pseudogene	Chr10:105524596-105525465 (+)
NOD/ShiLtJ	ENSMUSG00190021615	pseudogene	Chr10:103662866-103663727 (+)
NZO/HlLtJ	ENSMUSG00225041093	pseudogene	Chr10:109780192-109781061 (+)
PWK/PhJ	ENSLUMG00010014236	pseudogene	Chr10:103262712-103263590 (+)
SPRET/EiJ	ENSMSPG00010005754	pseudogene	Chr10:105088475-105089310 (+)
WSB/EiJ	ENSIUOG00005010532	pseudogene	Chr10:103339000-103339869 (+)

Homology

• Gene Tree
  Gm19007
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19007
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112443 (Evidence)
• NCBI Gene
  100418113

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112443	Ensembl Gene Model | MGI Sequence Detail	874	C57BL/6J
transcript	ENSMUST00000217746	Ensembl | MGI Sequence Detail	874	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm19007:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95641	Chr10:106785063-106785069 (+)	-92 bp