Gm19000 Pseudogene Detail

Summary

• Symbol
  Gm19000
• Name
  predicted gene, 19000

• Feature Type
  pseudogene
• IDs
  MGI:5011185
  NCBI Gene: 100418100
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:62422172-62422839 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 36.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011185	pseudogene	Chr16:62421746-62422844 (+)
129S1/SvImJ	ENSMUSG00200021353	pseudogene	Chr16:59409071-59410162 (+)
A/J	ENSMUSG00195025463	pseudogene	Chr16:58988893-58989977 (+)
AKR/J	ENSMUSG00220019894	pseudogene	Chr16:59339770-59340874 (+)
BALB/cJ	ENSMUSG00180024460	pseudogene	Chr16:59163025-59164109 (+)
C3H/HeJ	ENSMUSG00175018235	pseudogene	Chr16:59437877-59438962 (+)
C57BL/6NJ	ENSMUSG00215025408	pseudogene	Chr16:59245908-59247006 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210019715	pseudogene	Chr16:59412915-59414028 (+)
DBA/2J	ENSMUSG00185025887	pseudogene	Chr16:59340407-59341495 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230007525	pseudogene	Chr16:61899969-61901057 (+)
NOD/ShiLtJ	ENSMUSG00190007437	pseudogene	Chr16:59385624-59386724 (+)
NZO/HlLtJ	ENSMUSG00225036130	pseudogene	Chr16:65133863-65134967 (+)
PWK/PhJ	ENSLUMG00010012206	pseudogene	Chr16:59210199-59211314 (+)
SPRET/EiJ	ENSMSPG00010001674	pseudogene	Chr16:59842461-59843643 (+)
WSB/EiJ	ENSIUOG00005009634	pseudogene	Chr16:59459235-59460287 (+)

Homology

• Gene Tree
  Gm19000
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000116962 (Evidence)
• NCBI Gene
  100418100

Representative Sequences			Length	Strain/Species
genomic	100418100	NCBI Gene Model | MGI Sequence Detail	668	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;