Gm18971 Pseudogene Detail

Summary

• Symbol
  Gm18971
• Name
  predicted gene, 18971

• Feature Type
  pseudogene
• IDs
  MGI:5011156
  NCBI Gene: 100418057
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:109119543-109119916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011156	pseudogene	Chr5:109119543-109120045 (+)
129S1/SvImJ	ENSMUSG00200024667	pseudogene	Chr5:102893826-102894199 (+)
A/J	ENSMUSG00195039665	pseudogene	Chr5:102336684-102337057 (+)
AKR/J	ENSMUSG00220052237	pseudogene	Chr5:101901835-101902208 (+)
BALB/cJ	ENSMUSG00180047041	pseudogene	Chr5:102489510-102489883 (+)
C3H/HeJ	ENSMUSG00175048419	pseudogene	Chr5:104538693-104539066 (+)
C57BL/6NJ	ENSMUSG00215039273	pseudogene	Chr5:102522560-102522933 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210044425	pseudogene	Chr5:103296280-103296653 (+)
DBA/2J	ENSMUSG00185048909	pseudogene	Chr5:106194269-106194642 (+)
FVB/NJ	ENSMUSG00205051804	pseudogene	Chr5:102222727-102223100 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230032814	pseudogene	Chr5:110434883-110435256 (+)
NOD/ShiLtJ	ENSMUSG00190051644	pseudogene	Chr5:102203226-102203599 (+)
NZO/HlLtJ	ENSMUSG00225026536	pseudogene	Chr5:118056737-118057110 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010047875	pseudogene	Chr5:104312252-104312625 (+)
WSB/EiJ	ENSIUOG00005046496	pseudogene	Chr5:104924253-104924626 (+)

Homology

• Gene Tree
  Gm18971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm18971
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000105193 (Evidence)
• NCBI Gene
  100418057

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105193	Ensembl Gene Model | MGI Sequence Detail	374	C57BL/6J
transcript	ENSMUST00000197240	Ensembl | MGI Sequence Detail	374	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17