Gm18953 Pseudogene Detail

Summary

• Symbol
  Gm18953
• Name
  predicted gene, 18953

• Feature Type
  pseudogene
• IDs
  MGI:5011138
  NCBI Gene: 100418025
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:90069827-90071767 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011138	pseudogene	Chr2:90069825-90071767 (+)
129S1/SvImJ	ENSMUSG00200054186	pseudogene	Chr2:87126424-87128364 (-)
A/J	ENSMUSG00195053981	pseudogene	Chr2:87246893-87248806 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180054949	pseudogene	Chr2:87147310-87149223 (-)
C3H/HeJ	ENSMUSG00175054334	pseudogene	Chr2:87422218-87424131 (-)
C57BL/6NJ	ENSMUSG00215053923	pseudogene	Chr2:87253699-87255612 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037275	pseudogene	Chr2:84569745-84571694 (-)
CAST/EiJ	ENSTCUG00005052976	pseudogene	Chr2:86721113-86723110 (-)
CBA/J	ENSMUSG00210044449	pseudogene	Chr2:87433392-87435305 (-)
DBA/2J	ENSMUSG00185057254	pseudogene	Chr2:87143825-87145738 (-)
FVB/NJ	ENSMUSG00205053254	pseudogene	Chr2:86446463-86448403 (-)
JF1/MsJ	ENSUMUG00000037898	pseudogene	Chr2:86973616-86975672 (+)
LP/J	ENSMUSG00230046446	pseudogene	Chr2:88894545-88896458 (-)
NOD/ShiLtJ	ENSMUSG00190052506	pseudogene	Chr2:87222506-87224419 (-)
NZO/HlLtJ	ENSMUSG00225053972	pseudogene	Chr2:96810882-96812795 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm18953
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm18953
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000093625 (Evidence)
• NCBI Gene
  100418025

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093625	Ensembl Gene Model | MGI Sequence Detail	1941	C57BL/6J
transcript	ENSMUST00000175694	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm18953:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18750	Chr2:90069822-90069845 (+)	7 bp