Gm18945 Pseudogene Detail

Summary

• Symbol
  Gm18945
• Name
  predicted gene, 18945

• Feature Type
  pseudogene
• IDs
  MGI:5011130
  NCBI Gene: 100418010
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:117279642-117280731 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 65.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011130	pseudogene	Chr13:117279642-117280733 (+)
129S1/SvImJ	ENSMUSG00200003754	pseudogene	Chr13:111760850-111761937 (+)
A/J	ENSMUSG00195000981	pseudogene	Chr13:112257821-112258910 (+)
AKR/J	ENSMUSG00220033166	pseudogene	Chr13:110700465-110701554 (+)
BALB/cJ	ENSMUSG00180010951	pseudogene	Chr13:112852434-112853523 (+)
C3H/HeJ	ENSMUSG00175002433	pseudogene	Chr13:112937345-112938432 (+)
C57BL/6NJ	ENSMUSG00215000921	pseudogene	Chr13:112942400-112943489 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002618	pseudogene	Chr13:111992861-111993950 (+)
CBA/J	ENSMUSG00210017319	pseudogene	Chr13:112267292-112268381 (+)
DBA/2J	ENSMUSG00185030236	pseudogene	Chr13:116030224-116031311 (+)
FVB/NJ	ENSMUSG00205001297	pseudogene	Chr13:111690910-111691999 (+)
JF1/MsJ	ENSUMUG00000017991	pseudogene	Chr13:115481376-115482465 (+)
LP/J	ENSMUSG00230012451	pseudogene	Chr13:126228502-126229589 (+)
NOD/ShiLtJ	ENSMUSG00190009758	pseudogene	Chr13:112568494-112569583 (+)
NZO/HlLtJ	ENSMUSG00225031247	pseudogene	Chr13:118379554-118380641 (+)
PWK/PhJ	ENSLUMG00010008137	pseudogene	Chr13:111558844-111559933 (+)
SPRET/EiJ	ENSMSPG00010007122	pseudogene	Chr13:113358898-113359987 (+)
WSB/EiJ	ENSIUOG00005013210	pseudogene	Chr13:111718477-111719566 (+)

Homology

• Gene Tree
  Gm18945
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114964 (Evidence)
• NCBI Gene
  100418010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114964	Ensembl Gene Model | MGI Sequence Detail	1090	C57BL/6J
transcript	ENSMUST00000225620	Ensembl | MGI Sequence Detail	1090	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;