Gm18939 Pseudogene Detail

Summary

• Symbol
  Gm18939
• Name
  predicted gene, 18939

• Feature Type
  pseudogene
• IDs
  MGI:5011124
  NCBI Gene: 100417999
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:39998443-39999114 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 18.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011124	pseudogene	Chr12:39998443-39999123 (-)
129S1/SvImJ	ENSMUSG00200011623	pseudogene	Chr12:31873290-31875478 (-)
A/J	ENSMUSG00195018991	pseudogene	Chr12:34553223-34555411 (-)
AKR/J	ENSMUSG00220005391	pseudogene	Chr12:32543292-32545480 (-)
BALB/cJ	ENSMUSG00180003664	pseudogene	Chr12:33540389-33542577 (-)
C3H/HeJ	ENSMUSG00175017337	pseudogene	Chr12:36593685-36595873 (-)
C57BL/6NJ	ENSMUSG00215013594	pseudogene	Chr12:32937077-32939265 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003694	pseudogene	Chr12:33299989-33302173 (-)
CBA/J	ENSMUSG00210016161	pseudogene	Chr12:33072766-33074952 (-)
DBA/2J	ENSMUSG00185020418	pseudogene	Chr12:35105948-35108136 (-)
FVB/NJ	ENSMUSG00205001636	pseudogene	Chr12:32956401-32958592 (-)
JF1/MsJ	ENSUMUG00000011890	pseudogene	Chr12:39291576-39292900 (-)
LP/J	ENSMUSG00230010246	pseudogene	Chr12:42038426-42040614 (-)
NOD/ShiLtJ	ENSMUSG00190003685	pseudogene	Chr12:32102277-32104466 (-)
NZO/HlLtJ	ENSMUSG00225031321	pseudogene	Chr12:44251987-44254179 (-)
PWK/PhJ	ENSLUMG00010012824	pseudogene	Chr12:33447070-33448473 (-)
SPRET/EiJ	ENSMSPG00010002025	pseudogene	Chr12:34283924-34285275 (-)
WSB/EiJ	ENSIUOG00005001331	pseudogene	Chr12:32829907-32832097 (-)

Homology

• Gene Tree
  Gm18939
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114147 (Evidence)
• NCBI Gene
  100417999

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114147	Ensembl Gene Model | MGI Sequence Detail	672	C57BL/6J
transcript	ENSMUST00000222549	Ensembl | MGI Sequence Detail	672	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;