Gm18917 Pseudogene Detail

Summary

• Symbol
  Gm18917
• Name
  predicted gene, 18917

• Feature Type
  pseudogene
• IDs
  MGI:5011102
  NCBI Gene: 100417951
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:173591731-173592280 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 97.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011102	pseudogene	Chr2:173591711-173592283 (+)
129S1/SvImJ	ENSMUSG00200040912	pseudogene	Chr2:170529384-170529933 (+)
A/J	ENSMUSG00195026452	pseudogene	Chr2:170857905-170858454 (+)
AKR/J	ENSMUSG00220037088	pseudogene	Chr2:170152484-170153033 (+)
BALB/cJ	ENSMUSG00180040019	pseudogene	Chr2:170291127-170291676 (+)
C3H/HeJ	ENSMUSG00175045101	pseudogene	Chr2:171063000-171063549 (+)
C57BL/6NJ	ENSMUSG00215034202	pseudogene	Chr2:170489683-170490232 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009005	pseudogene	Chr2:169396948-169397497 (+)
CBA/J	ENSMUSG00210043938	pseudogene	Chr2:170973255-170973804 (+)
DBA/2J	ENSMUSG00185026786	pseudogene	Chr2:170686825-170687374 (+)
FVB/NJ	ENSMUSG00205025591	pseudogene	Chr2:169743506-169744055 (+)
JF1/MsJ	ENSUMUG00000043520	pseudogene	Chr2:170374448-170374997 (+)
LP/J	ENSMUSG00230012830	pseudogene	Chr2:172265702-172266251 (+)
NOD/ShiLtJ	ENSMUSG00190044274	pseudogene	Chr2:170370359-170370908 (+)
NZO/HlLtJ	ENSMUSG00225003744	pseudogene	Chr2:180258029-180258578 (+)
PWK/PhJ	ENSLUMG00010039950	pseudogene	Chr2:170272517-170273066 (+)
SPRET/EiJ	ENSMSPG00010030504	pseudogene	Chr2:173049969-173050518 (+)
WSB/EiJ	ENSIUOG00005025829	pseudogene	Chr2:170111060-170111609 (+)

Homology

• Gene Tree
  Gm18917
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118399 (Evidence)
• NCBI Gene
  100417951

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118399	Ensembl Gene Model | MGI Sequence Detail	550	C57BL/6J
transcript	ENSMUST00000238291	Ensembl | MGI Sequence Detail	550	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;