Gm18899 Pseudogene Detail

Summary

• Symbol
  Gm18899
• Name
  predicted gene, 18899

• Feature Type
  pseudogene
• IDs
  MGI:5011084
  NCBI Gene: 100417922
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:78302664-78303209 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 35.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011084	pseudogene	Chr12:78302187-78303426 (-)
129S1/SvImJ	ENSMUSG00200033141	pseudogene	Chr12:70263757-70264302 (-)
A/J	ENSMUSG00195034510	pseudogene	Chr12:72965327-72965872 (-)
AKR/J	ENSMUSG00220015353	pseudogene	Chr12:70746838-70747383 (-)
BALB/cJ	ENSMUSG00180025050	pseudogene	Chr12:71936179-71936724 (-)
C3H/HeJ	ENSMUSG00175044986	pseudogene	Chr12:75097786-75098331 (-)
C57BL/6NJ	ENSMUSG00215046641	pseudogene	Chr12:71302323-71302868 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037164	pseudogene	Chr12:71236784-71237329 (-)
CBA/J	ENSMUSG00210047323	pseudogene	Chr12:71512171-71512716 (-)
DBA/2J	ENSMUSG00185044463	pseudogene	Chr12:73372751-73373296 (-)
FVB/NJ	ENSMUSG00205040112	pseudogene	Chr12:71116795-71117340 (-)
JF1/MsJ	ENSUMUG00000025874	pseudogene	Chr12:77375188-77375733 (-)
LP/J	ENSMUSG00230022315	pseudogene	Chr12:80381971-80382516 (-)
NOD/ShiLtJ	ENSMUSG00190013199	pseudogene	Chr12:70570526-70571071 (-)
NZO/HlLtJ	ENSMUSG00225038956	pseudogene	Chr12:82443911-82444456 (-)
PWK/PhJ	ENSLUMG00010029049	pseudogene	Chr12:71389481-71390026 (-)
SPRET/EiJ	ENSMSPG00010021930	pseudogene	Chr12:73211018-73211563 (-)
WSB/EiJ	ENSIUOG00005012656	pseudogene	Chr12:71199721-71200266 (-)

Homology

• Gene Tree
  Gm18899
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm18899
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111932 (Evidence)
• NCBI Gene
  100417922

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111932	Ensembl Gene Model | MGI Sequence Detail	546	C57BL/6J
transcript	ENSMUST00000217663	Ensembl | MGI Sequence Detail	546	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm18899:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116789	Chr12:78303278-78303294 (-)	-77 bp