Gm18869 Pseudogene Detail

Summary

• Symbol
  Gm18869
• Name
  predicted gene, 18869

• Feature Type
  pseudogene
• IDs
  MGI:5011054
  NCBI Gene: 100417864
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:16197076-16198072 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011054	pseudogene	Chr16:16197074-16198082 (+)
129S1/SvImJ	ENSMUSG00200047014	pseudogene	Chr16:13193499-13194495 (+)
A/J	ENSMUSG00195035939	pseudogene	Chr16:12750440-12751436 (+)
AKR/J	ENSMUSG00220046964	pseudogene	Chr16:13066682-13067678 (+)
BALB/cJ	ENSMUSG00180041273	pseudogene	Chr16:12991760-12992756 (+)
C3H/HeJ	ENSMUSG00175050112	pseudogene	Chr16:13136770-13137766 (+)
C57BL/6NJ	ENSMUSG00215041690	pseudogene	Chr16:12857878-12858874 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045665	pseudogene	Chr16:13016717-13017718 (+)
CBA/J	ENSMUSG00210047508	pseudogene	Chr16:13153131-13154127 (+)
DBA/2J	ENSMUSG00185034013	pseudogene	Chr16:13099245-13100241 (+)
FVB/NJ	ENSMUSG00205048162	pseudogene	Chr16:13107892-13108888 (+)
JF1/MsJ	ENSUMUG00000053542	pseudogene	Chr16:13151660-13152661 (+)
LP/J	ENSMUSG00230045799	pseudogene	Chr16:15677196-15678192 (+)
NOD/ShiLtJ	ENSMUSG00190051117	pseudogene	Chr16:13239199-13240195 (+)
NZO/HlLtJ	ENSMUSG00225032201	pseudogene	Chr16:18922972-18923968 (+)
PWK/PhJ	ENSLUMG00010050416	pseudogene	Chr16:13025351-13026348 (+)
SPRET/EiJ	ENSMSPG00010047819	pseudogene	Chr16:13060529-13061526 (+)
WSB/EiJ	ENSIUOG00005043767	pseudogene	Chr16:13210394-13211390 (+)

Homology

• Gene Tree
  Gm18869
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116192 (Evidence)
• NCBI Gene
  100417864

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116192	Ensembl Gene Model | MGI Sequence Detail	997	C57BL/6J
transcript	ENSMUST00000230562	Ensembl | MGI Sequence Detail	997	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;